Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24098 | 3' | -62.9 | NC_005262.1 | + | 3721 | 0.66 | 0.3711 |
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Target: 5'- gUCAgCGCgUCgCGCGCggCGUUGCGCa- -3' miRNA: 3'- gAGU-GCGgAGgGCGCG--GCAGCGCGaa -5' |
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| 24098 | 3' | -62.9 | NC_005262.1 | + | 59216 | 0.66 | 0.374417 |
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Target: 5'- gCUCACGCCcgagcagcgCCgccgcuggcgcgagaUGCGCCG-CGCGCg- -3' miRNA: 3'- -GAGUGCGGa--------GG---------------GCGCGGCaGCGCGaa -5' |
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| 24098 | 3' | -62.9 | NC_005262.1 | + | 23061 | 0.66 | 0.378592 |
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Target: 5'- -aCGCGCCgccgCCCGUGCucgagggCGUCaGCGCc- -3' miRNA: 3'- gaGUGCGGa---GGGCGCG-------GCAG-CGCGaa -5' |
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| 24098 | 3' | -62.9 | NC_005262.1 | + | 10969 | 0.66 | 0.379431 |
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Target: 5'- uUCGCGCUgucggCGCGCCGggaacgccggUCGCGCUc -3' miRNA: 3'- gAGUGCGGagg--GCGCGGC----------AGCGCGAa -5' |
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| 24098 | 3' | -62.9 | NC_005262.1 | + | 29289 | 0.66 | 0.379431 |
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Target: 5'- -cCGCGUCgucucgcagaagUCgCGCGCCGcCGCGCg- -3' miRNA: 3'- gaGUGCGG------------AGgGCGCGGCaGCGCGaa -5' |
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| 24098 | 3' | -62.9 | NC_005262.1 | + | 4249 | 0.66 | 0.379431 |
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Target: 5'- cCUCGCGCUcCUCGUgGCCcauugCGCGCUUg -3' miRNA: 3'- -GAGUGCGGaGGGCG-CGGca---GCGCGAA- -5' |
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| 24098 | 3' | -62.9 | NC_005262.1 | + | 48068 | 0.65 | 0.385336 |
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Target: 5'- gUCGCaccugccgcgacgaGCCgCCCgGCGCCGaCGCGCg- -3' miRNA: 3'- gAGUG--------------CGGaGGG-CGCGGCaGCGCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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