miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24098 3' -62.9 NC_005262.1 + 50087 0.67 0.309046
Target:  5'- --uGCGCCgaccgaaCCCGCGCCG-CGCGa-- -3'
miRNA:   3'- gagUGCGGa------GGGCGCGGCaGCGCgaa -5'
24098 3' -62.9 NC_005262.1 + 50834 0.68 0.273794
Target:  5'- gUCgACGCCgagCCgGUcggcgauGCCGUCGCGCa- -3'
miRNA:   3'- gAG-UGCGGa--GGgCG-------CGGCAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 58607 0.7 0.194053
Target:  5'- gUCGCGCCggCCGCGCC--CGCGCc- -3'
miRNA:   3'- gAGUGCGGagGGCGCGGcaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 58654 0.67 0.300451
Target:  5'- -gCGCGCCgagcaggaucagCgCCGC-CCGUCGCGCa- -3'
miRNA:   3'- gaGUGCGGa-----------G-GGCGcGGCAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 58867 0.71 0.175197
Target:  5'- gUCACGCCggcgcagCCCGCGCguuggcugcUGcCGCGCUg -3'
miRNA:   3'- gAGUGCGGa------GGGCGCG---------GCaGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 58988 1.04 0.000486
Target:  5'- cCUCACGCCUCCCGCGCCGUCGCGCUUc -3'
miRNA:   3'- -GAGUGCGGAGGGCGCGGCAGCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 59216 0.66 0.374417
Target:  5'- gCUCACGCCcgagcagcgCCgccgcuggcgcgagaUGCGCCG-CGCGCg- -3'
miRNA:   3'- -GAGUGCGGa--------GG---------------GCGCGGCaGCGCGaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.