miRNA display CGI

Results 41 - 47 of 47 are showing below:
Show page: 1 2 3

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
24098	3'	-62.9	NC_005262.1	+	46304	0.66	0.346867
	Target:  5'- aUCgACGCgUCgCGCGCgGcgCGCGCUUc -3' miRNA:   3'- gAG-UGCGgAGgGCGCGgCa-GCGCGAA- -5'
24098	3'	-62.9	NC_005262.1	+	21517	0.66	0.346867
	Target:  5'- -aCACGUCgccggugCCCGUGCCGcUCGuCGCc- -3' miRNA:   3'- gaGUGCGGa------GGGCGCGGC-AGC-GCGaa -5'
24098	3'	-62.9	NC_005262.1	+	29798	0.67	0.323787
	Target:  5'- gUCACGCCgUCCGCGCCcauGUUaCGCa- -3' miRNA:   3'- gAGUGCGGaGGGCGCGG---CAGcGCGaa -5'
24098	3'	-62.9	NC_005262.1	+	19631	0.67	0.316352
	Target:  5'- gCUCGcCGCCgcgcUCCUGC-CCGaUCGCGCg- -3' miRNA:   3'- -GAGU-GCGG----AGGGCGcGGC-AGCGCGaa -5'
24098	3'	-62.9	NC_005262.1	+	3283	0.67	0.309046
	Target:  5'- gUCACGCUcuuggcggCCUGCGCCG-CGCGg-- -3' miRNA:   3'- gAGUGCGGa-------GGGCGCGGCaGCGCgaa -5'
24098	3'	-62.9	NC_005262.1	+	58654	0.67	0.300451
	Target:  5'- -gCGCGCCgagcaggaucagCgCCGC-CCGUCGCGCa- -3' miRNA:   3'- gaGUGCGGa-----------G-GGCGcGGCAGCGCGaa -5'
24098	3'	-62.9	NC_005262.1	+	29289	0.66	0.379431
	Target:  5'- -cCGCGUCgucucgcagaagUCgCGCGCCGcCGCGCg- -3' miRNA:   3'- gaGUGCGG------------AGgGCGCGGCaGCGCGaa -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home