Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24098 | 3' | -62.9 | NC_005262.1 | + | 59216 | 0.66 | 0.374417 |
Target: 5'- gCUCACGCCcgagcagcgCCgccgcuggcgcgagaUGCGCCG-CGCGCg- -3' miRNA: 3'- -GAGUGCGGa--------GG---------------GCGCGGCaGCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 10335 | 0.71 | 0.166395 |
Target: 5'- uUCACGCCguugUCCuCGaCGCCGgcgcCGCGCUUc -3' miRNA: 3'- gAGUGCGG----AGG-GC-GCGGCa---GCGCGAA- -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 15017 | 0.71 | 0.166395 |
Target: 5'- gCUCGCGCacgUCCUGCGCUGccauguUCGCGCc- -3' miRNA: 3'- -GAGUGCGg--AGGGCGCGGC------AGCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 19175 | 0.68 | 0.26151 |
Target: 5'- -cCAUGCCUUgCGCGCgGgcuucUCGCGCUc -3' miRNA: 3'- gaGUGCGGAGgGCGCGgC-----AGCGCGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 40854 | 0.72 | 0.14121 |
Target: 5'- aUCACGCCUCCCucgcgcggagcaugGCGUCGgcgagCGCGUa- -3' miRNA: 3'- gAGUGCGGAGGG--------------CGCGGCa----GCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 28234 | 0.75 | 0.090466 |
Target: 5'- uUCGCGCUcuuUCCCGCGCCGgcgagcgacaUCGCgGCUUg -3' miRNA: 3'- gAGUGCGG---AGGGCGCGGC----------AGCG-CGAA- -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 15316 | 0.71 | 0.175197 |
Target: 5'- gUCGCGCCgCCCGUGCCcaCGCgGCUc -3' miRNA: 3'- gAGUGCGGaGGGCGCGGcaGCG-CGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 29289 | 0.66 | 0.379431 |
Target: 5'- -cCGCGUCgucucgcagaagUCgCGCGCCGcCGCGCg- -3' miRNA: 3'- gaGUGCGG------------AGgGCGCGGCaGCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 23061 | 0.66 | 0.378592 |
Target: 5'- -aCGCGCCgccgCCCGUGCucgagggCGUCaGCGCc- -3' miRNA: 3'- gaGUGCGGa---GGGCGCG-------GCAG-CGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 4249 | 0.66 | 0.379431 |
Target: 5'- cCUCGCGCUcCUCGUgGCCcauugCGCGCUUg -3' miRNA: 3'- -GAGUGCGGaGGGCG-CGGca---GCGCGAA- -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 46731 | 0.73 | 0.118295 |
Target: 5'- -gCGCGCCUaUCgGCGCCGUgCGCGCg- -3' miRNA: 3'- gaGUGCGGA-GGgCGCGGCA-GCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 40559 | 0.73 | 0.116421 |
Target: 5'- -aCGCGCCgggcaacaccggcggUgCCGCGaCCGUCGCGCUg -3' miRNA: 3'- gaGUGCGG---------------AgGGCGC-GGCAGCGCGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 46444 | 0.72 | 0.131523 |
Target: 5'- -cCGCGCCgCCCGCGCCGgacccgaaugcCGCGCc- -3' miRNA: 3'- gaGUGCGGaGGGCGCGGCa----------GCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 58867 | 0.71 | 0.175197 |
Target: 5'- gUCACGCCggcgcagCCCGCGCguuggcugcUGcCGCGCUg -3' miRNA: 3'- gAGUGCGGa------GGGCGCG---------GCaGCGCGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 46003 | 0.67 | 0.309046 |
Target: 5'- uUCGCGuuCCUgCaCGCGCaaggCGUCGCGCUg -3' miRNA: 3'- gAGUGC--GGAgG-GCGCG----GCAGCGCGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 11445 | 0.71 | 0.175197 |
Target: 5'- -aCACGCCgcgCCCGCGCa-UCGUGCc- -3' miRNA: 3'- gaGUGCGGa--GGGCGCGgcAGCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 10969 | 0.66 | 0.379431 |
Target: 5'- uUCGCGCUgucggCGCGCCGggaacgccggUCGCGCUc -3' miRNA: 3'- gAGUGCGGagg--GCGCGGC----------AGCGCGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 41958 | 0.67 | 0.323787 |
Target: 5'- -cCGCGCCUUgugCCGCGCCuGUUGC-CUg -3' miRNA: 3'- gaGUGCGGAG---GGCGCGG-CAGCGcGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 28807 | 0.67 | 0.294823 |
Target: 5'- cCUCGCGCCcgcgcaUCUCGaGCucgCGUCGCGCUc -3' miRNA: 3'- -GAGUGCGG------AGGGCgCG---GCAGCGCGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 50087 | 0.67 | 0.309046 |
Target: 5'- --uGCGCCgaccgaaCCCGCGCCG-CGCGa-- -3' miRNA: 3'- gagUGCGGa------GGGCGCGGCaGCGCgaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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