miRNA display CGI

Results 41 - 47 of 47 are showing below:
Show page: 1 2 3

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
24098	3'	-62.9	NC_005262.1	+	28807	0.67	0.294823
	Target:  5'- cCUCGCGCCcgcgcaUCUCGaGCucgCGUCGCGCUc -3' miRNA:   3'- -GAGUGCGG------AGGGCgCG---GCAGCGCGAa -5'
24098	3'	-62.9	NC_005262.1	+	50087	0.67	0.309046
	Target:  5'- --uGCGCCgaccgaaCCCGCGCCG-CGCGa-- -3' miRNA:   3'- gagUGCGGa------GGGCGCGGCaGCGCgaa -5'
24098	3'	-62.9	NC_005262.1	+	46003	0.67	0.309046
	Target:  5'- uUCGCGuuCCUgCaCGCGCaaggCGUCGCGCUg -3' miRNA:   3'- gAGUGC--GGAgG-GCGCG----GCAGCGCGAa -5'
24098	3'	-62.9	NC_005262.1	+	41958	0.67	0.323787
	Target:  5'- -cCGCGCCUUgugCCGCGCCuGUUGC-CUg -3' miRNA:   3'- gaGUGCGGAG---GGCGCGG-CAGCGcGAa -5'
24098	3'	-62.9	NC_005262.1	+	10969	0.66	0.379431
	Target:  5'- uUCGCGCUgucggCGCGCCGggaacgccggUCGCGCUc -3' miRNA:   3'- gAGUGCGGagg--GCGCGGC----------AGCGCGAa -5'
24098	3'	-62.9	NC_005262.1	+	48068	0.65	0.385336
	Target:  5'- gUCGCaccugccgcgacgaGCCgCCCgGCGCCGaCGCGCg- -3' miRNA:   3'- gAGUG--------------CGGaGGG-CGCGGCaGCGCGaa -5'
24098	3'	-62.9	NC_005262.1	+	58988	1.04	0.000486
	Target:  5'- cCUCACGCCUCCCGCGCCGUCGCGCUUc -3' miRNA:   3'- -GAGUGCGGAGGGCGCGGCAGCGCGAA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home