miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24098 3' -62.9 NC_005262.1 + 34149 0.68 0.287905
Target:  5'- -cUACGUCUaCCCGCcgGCCGUCGCcgGCa- -3'
miRNA:   3'- gaGUGCGGA-GGGCG--CGGCAGCG--CGaa -5'
24098 3' -62.9 NC_005262.1 + 8771 0.68 0.287905
Target:  5'- --aACGUCUugCCCGCGCCGaccgCGUGCg- -3'
miRNA:   3'- gagUGCGGA--GGGCGCGGCa---GCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 19939 0.68 0.274453
Target:  5'- aUCGCGCCgaggUCCUGCcggccaccGCCG-CGCGCg- -3'
miRNA:   3'- gAGUGCGG----AGGGCG--------CGGCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 46230 0.68 0.274453
Target:  5'- cCUCG-GCUUCgCGCGCCGcCGCgGCUg -3'
miRNA:   3'- -GAGUgCGGAGgGCGCGGCaGCG-CGAa -5'
24098 3' -62.9 NC_005262.1 + 50834 0.68 0.273794
Target:  5'- gUCgACGCCgagCCgGUcggcgauGCCGUCGCGCa- -3'
miRNA:   3'- gAG-UGCGGa--GGgCG-------CGGCAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 35215 0.68 0.267918
Target:  5'- aUCACGCCguaggGCauGCCGUCGCGCg- -3'
miRNA:   3'- gAGUGCGGaggg-CG--CGGCAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 19175 0.68 0.26151
Target:  5'- -cCAUGCCUUgCGCGCgGgcuucUCGCGCUc -3'
miRNA:   3'- gaGUGCGGAGgGCGCGgC-----AGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 11938 0.68 0.255226
Target:  5'- gCUCGCGUCgUUCGCGgCGcCGCGCUUc -3'
miRNA:   3'- -GAGUGCGGaGGGCGCgGCaGCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 40220 0.69 0.243031
Target:  5'- uUCACGgcgaUCUCCUGCGCCcG-CGCGCg- -3'
miRNA:   3'- gAGUGC----GGAGGGCGCGG-CaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 48205 0.69 0.220098
Target:  5'- -gCACGCgCUCCuCGCGCgCG-CGCGCc- -3'
miRNA:   3'- gaGUGCG-GAGG-GCGCG-GCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 42161 0.7 0.209339
Target:  5'- aUCugGCCgUCgCCGuCGCCGUCGCaCUc -3'
miRNA:   3'- gAGugCGG-AG-GGC-GCGGCAGCGcGAa -5'
24098 3' -62.9 NC_005262.1 + 5783 0.7 0.204131
Target:  5'- -aCAgGCCaUCuuGCGCCG-CGCGCa- -3'
miRNA:   3'- gaGUgCGG-AGggCGCGGCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 58607 0.7 0.194053
Target:  5'- gUCGCGCCggCCGCGCC--CGCGCc- -3'
miRNA:   3'- gAGUGCGGagGGCGCGGcaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 29660 0.71 0.179752
Target:  5'- -gCAUGCCgCCCGCGCC--CGCGCa- -3'
miRNA:   3'- gaGUGCGGaGGGCGCGGcaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 58867 0.71 0.175197
Target:  5'- gUCACGCCggcgcagCCCGCGCguuggcugcUGcCGCGCUg -3'
miRNA:   3'- gAGUGCGGa------GGGCGCG---------GCaGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 11445 0.71 0.175197
Target:  5'- -aCACGCCgcgCCCGCGCa-UCGUGCc- -3'
miRNA:   3'- gaGUGCGGa--GGGCGCGgcAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 15316 0.71 0.175197
Target:  5'- gUCGCGCCgCCCGUGCCcaCGCgGCUc -3'
miRNA:   3'- gAGUGCGGaGGGCGCGGcaGCG-CGAa -5'
24098 3' -62.9 NC_005262.1 + 10335 0.71 0.166395
Target:  5'- uUCACGCCguugUCCuCGaCGCCGgcgcCGCGCUUc -3'
miRNA:   3'- gAGUGCGG----AGG-GC-GCGGCa---GCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 15017 0.71 0.166395
Target:  5'- gCUCGCGCacgUCCUGCGCUGccauguUCGCGCc- -3'
miRNA:   3'- -GAGUGCGg--AGGGCGCGGC------AGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 40854 0.72 0.14121
Target:  5'- aUCACGCCUCCCucgcgcggagcaugGCGUCGgcgagCGCGUa- -3'
miRNA:   3'- gAGUGCGGAGGG--------------CGCGGCa----GCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.