Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24098 | 5' | -53.9 | NC_005262.1 | + | 24582 | 0.72 | 0.479519 |
Target: 5'- cGCcguGUCGCGGUGCGcuGACAAgGUGAg -3' miRNA: 3'- -CGuu-CGGCGCCACGUc-CUGUUgUACU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 23405 | 0.71 | 0.510656 |
Target: 5'- -aAGGCgGCGaUGCGgcGGGCAGCAUGAg -3' miRNA: 3'- cgUUCGgCGCcACGU--CCUGUUGUACU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 30409 | 0.7 | 0.586147 |
Target: 5'- aCGAGCCGCGuGcGCuGGACGGCGc-- -3' miRNA: 3'- cGUUCGGCGC-CaCGuCCUGUUGUacu -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 56040 | 0.68 | 0.685457 |
Target: 5'- cGCAAgggcccGCCGCagaaGGgGCAGGACAucauccugaACGUGAu -3' miRNA: 3'- -CGUU------CGGCG----CCaCGUCCUGU---------UGUACU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 49088 | 0.68 | 0.696376 |
Target: 5'- aGCAGGCCGUuacgauGGcGCcGGGCAugGUGc -3' miRNA: 3'- -CGUUCGGCG------CCaCGuCCUGUugUACu -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 19119 | 0.68 | 0.718014 |
Target: 5'- gGCuuGUCGCGGU-CGGG-CAGCAUGu -3' miRNA: 3'- -CGuuCGGCGCCAcGUCCuGUUGUACu -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 10838 | 0.67 | 0.72871 |
Target: 5'- cGCGuccGCCGCGcucagGGGGCGGCAUGAg -3' miRNA: 3'- -CGUu--CGGCGCcacg-UCCUGUUGUACU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 52061 | 0.67 | 0.72871 |
Target: 5'- uCGAGuCCGgGGUGCGGGAUuuugccGCAUa- -3' miRNA: 3'- cGUUC-GGCgCCACGUCCUGu-----UGUAcu -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 23365 | 0.67 | 0.739308 |
Target: 5'- -gAAGCgCGCGGcgGCgaAGGcccGCAACGUGAa -3' miRNA: 3'- cgUUCG-GCGCCa-CG--UCC---UGUUGUACU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 988 | 0.66 | 0.790426 |
Target: 5'- gGCGAcCUGCGGgGCGGGGCggUGUaGAg -3' miRNA: 3'- -CGUUcGGCGCCaCGUCCUGuuGUA-CU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 13961 | 0.66 | 0.800195 |
Target: 5'- -uGAGCCGCuGGUGCAccagggggccGGugGGCGa-- -3' miRNA: 3'- cgUUCGGCG-CCACGU----------CCugUUGUacu -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 59023 | 1.11 | 0.001075 |
Target: 5'- uGCAAGCCGCGGUGCAGGACAACAUGAa -3' miRNA: 3'- -CGUUCGGCGCCACGUCCUGUUGUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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