Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24098 | 5' | -53.9 | NC_005262.1 | + | 30409 | 0.7 | 0.586147 |
Target: 5'- aCGAGCCGCGuGcGCuGGACGGCGc-- -3' miRNA: 3'- cGUUCGGCGC-CaCGuCCUGUUGUacu -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 46809 | 0.7 | 0.575182 |
Target: 5'- cGCGcucGGCCgGCGGcaGCAGGGCAAUAUcGGu -3' miRNA: 3'- -CGU---UCGG-CGCCa-CGUCCUGUUGUA-CU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 40054 | 0.71 | 0.531874 |
Target: 5'- cGCAcGCUGCGG-GCAGGuuggucaaaGCAGgGUGAu -3' miRNA: 3'- -CGUuCGGCGCCaCGUCC---------UGUUgUACU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 52171 | 0.71 | 0.510656 |
Target: 5'- cCGAGCCGaUGGUGCAGGggGCAgaGCggGAu -3' miRNA: 3'- cGUUCGGC-GCCACGUCC--UGU--UGuaCU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 23405 | 0.71 | 0.510656 |
Target: 5'- -aAGGCgGCGaUGCGgcGGGCAGCAUGAg -3' miRNA: 3'- cgUUCGgCGCcACGU--CCUGUUGUACU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 24582 | 0.72 | 0.479519 |
Target: 5'- cGCcguGUCGCGGUGCGcuGACAAgGUGAg -3' miRNA: 3'- -CGuu-CGGCGCCACGUc-CUGUUgUACU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 34132 | 0.73 | 0.39231 |
Target: 5'- gGCGGGCUGCGcGgGCGcGGGCGGCAUGc -3' miRNA: 3'- -CGUUCGGCGC-CaCGU-CCUGUUGUACu -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 46932 | 0.75 | 0.316089 |
Target: 5'- cGCAAGCCuggauggauuggGCGGaaucGCAGGACAGCAa-- -3' miRNA: 3'- -CGUUCGG------------CGCCa---CGUCCUGUUGUacu -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 28607 | 0.75 | 0.300744 |
Target: 5'- cGCuucauG-CGCGGcaUGCAGGACGACGUGAa -3' miRNA: 3'- -CGuu---CgGCGCC--ACGUCCUGUUGUACU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 63739 | 0.75 | 0.298493 |
Target: 5'- cGCGAGCCGCGGccuccccggcacauUGCAGGcACuggAGCAUGc -3' miRNA: 3'- -CGUUCGGCGCC--------------ACGUCC-UG---UUGUACu -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 48475 | 0.76 | 0.278816 |
Target: 5'- cGCGAGCCGCGuGgGCAcGGGCGGCGcGAc -3' miRNA: 3'- -CGUUCGGCGC-CaCGU-CCUGUUGUaCU- -5' |
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24098 | 5' | -53.9 | NC_005262.1 | + | 59023 | 1.11 | 0.001075 |
Target: 5'- uGCAAGCCGCGGUGCAGGACAACAUGAa -3' miRNA: 3'- -CGUUCGGCGCCACGUCCUGUUGUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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