miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 42151 0.66 0.332543
Target:  5'- cGGCGccgggcCCGGUCGcGGCCGa-UCGUCu -3'
miRNA:   3'- uCCGCuu----GGCCGGC-CCGGCgcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 1913 0.66 0.332543
Target:  5'- gGGGCGGAg-GGUgCGGGuuGCGUgGCUc -3'
miRNA:   3'- -UCCGCUUggCCG-GCCCggCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 22233 0.66 0.317905
Target:  5'- cGGCcGcgccgcccacGCCGGCCGGcCUGCGcaucacgccgUCGCCa -3'
miRNA:   3'- uCCGcU----------UGGCCGGCCcGGCGC----------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 11411 0.67 0.274992
Target:  5'- aAGcCGcGCCGcGCCGGGCCGCcgaaggugcgcgacaCGCCg -3'
miRNA:   3'- -UCcGCuUGGC-CGGCCCGGCGca-------------GCGG- -5'
24099 3' -64.8 NC_005262.1 + 17913 0.67 0.276926
Target:  5'- cGGCGAGCCGccgaUCGGcGCCGa--CGCCa -3'
miRNA:   3'- uCCGCUUGGCc---GGCC-CGGCgcaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 4795 0.67 0.276926
Target:  5'- cGGGaucgGAGCCGGCCGcGuaGCGcugguuUCGCCg -3'
miRNA:   3'- -UCCg---CUUGGCCGGCcCggCGC------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 51379 0.67 0.276926
Target:  5'- -cGCGAcGCCGGCCaaGGCCGCGcCuGaCCg -3'
miRNA:   3'- ucCGCU-UGGCCGGc-CCGGCGCaG-C-GG- -5'
24099 3' -64.8 NC_005262.1 + 29434 0.67 0.282794
Target:  5'- cAGGCGAagGCCcGCaaGGCUGCGgcagaggcgcaggUCGCCg -3'
miRNA:   3'- -UCCGCU--UGGcCGgcCCGGCGC-------------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 987 0.67 0.283452
Target:  5'- uGGCGAccuGCgGGgCGGGgCGguguagagcuUGUCGCCg -3'
miRNA:   3'- uCCGCU---UGgCCgGCCCgGC----------GCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 4125 0.67 0.283452
Target:  5'- -cGCGAaaGCCGGgcauaaaaaaaCGGcGCCGCGUggCGCCg -3'
miRNA:   3'- ucCGCU--UGGCCg----------GCC-CGGCGCA--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 34783 0.67 0.270521
Target:  5'- cGGCGGAUCGGUgaaGGuGUgGCuUCGCCu -3'
miRNA:   3'- uCCGCUUGGCCGg--CC-CGgCGcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 35518 0.67 0.266109
Target:  5'- uGGGUGGGCCacguggcagggcuucGGCCaaGCCGCGaugucgcUCGCCg -3'
miRNA:   3'- -UCCGCUUGG---------------CCGGccCGGCGC-------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 50407 0.67 0.264235
Target:  5'- cGGCGAucagcGCCGcggaGCgcgaGGGCCGCGUgcaCGUCg -3'
miRNA:   3'- uCCGCU-----UGGC----CGg---CCCGGCGCA---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 46541 0.67 0.264235
Target:  5'- cAGcGCGGcGCCGGCCGccgcucCCGCGaCGCCc -3'
miRNA:   3'- -UC-CGCU-UGGCCGGCcc----GGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 30399 0.67 0.290099
Target:  5'- uGGCGccugcGACCuugaGCUGGGCgGCGUCGaCg -3'
miRNA:   3'- uCCGC-----UUGGc---CGGCCCGgCGCAGCgG- -5'
24099 3' -64.8 NC_005262.1 + 17062 0.67 0.290099
Target:  5'- cGGCGAucgauCCGGUCGuGCCGgauugCGCCg -3'
miRNA:   3'- uCCGCUu----GGCCGGCcCGGCgca--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 52024 0.67 0.290099
Target:  5'- aGGaGCGcGCCcaGGUCGGGCCGC---GCCa -3'
miRNA:   3'- -UC-CGCuUGG--CCGGCCCGGCGcagCGG- -5'
24099 3' -64.8 NC_005262.1 + 58763 0.67 0.290099
Target:  5'- cAGGC--GCCGGCCGGcgagcaacuGCCGCuGgaggcaGCCg -3'
miRNA:   3'- -UCCGcuUGGCCGGCC---------CGGCG-Cag----CGG- -5'
24099 3' -64.8 NC_005262.1 + 54648 0.67 0.296867
Target:  5'- cGGGUGAuccgcauuccgACCGGcCCGGcGCCG-GUCcucauaGCCg -3'
miRNA:   3'- -UCCGCU-----------UGGCC-GGCC-CGGCgCAG------CGG- -5'
24099 3' -64.8 NC_005262.1 + 40565 0.67 0.296867
Target:  5'- cGGGCaacACCGG-CGGuGCCGCGaccgUCGCg -3'
miRNA:   3'- -UCCGcu-UGGCCgGCC-CGGCGC----AGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.