miRNA display CGI


Results 81 - 100 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 53698 0.68 0.228437
Target:  5'- cGGGCGcgcagaacCCGGCCGcgucgaaGGCCGUGgCGCUc -3'
miRNA:   3'- -UCCGCuu------GGCCGGC-------CCGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 8261 0.68 0.234011
Target:  5'- -cGCGAAagcagCGGCCGaGGaagcugcCCGCGUCGCUc -3'
miRNA:   3'- ucCGCUUg----GCCGGC-CC-------GGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 55625 0.68 0.234575
Target:  5'- -uGCGcAGCaagaaGCCGGGCCGCG-CGCUc -3'
miRNA:   3'- ucCGC-UUGgc---CGGCCCGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 24898 0.68 0.240275
Target:  5'- cAGGCGAGCuCGGCCa-GCCGgagGaCGCCg -3'
miRNA:   3'- -UCCGCUUG-GCCGGccCGGCg--CaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 46799 0.68 0.228437
Target:  5'- cGGCGAGCCGaugaCCGacgugcaGGcCCGCGcgcUCGCCg -3'
miRNA:   3'- uCCGCUUGGCc---GGC-------CC-GGCGC---AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 43670 0.68 0.252021
Target:  5'- uGGCGAccugaacgcaaGCCaaGCCGGGCCGaauUCGCg -3'
miRNA:   3'- uCCGCU-----------UGGc-CGGCCCGGCgc-AGCGg -5'
24099 3' -64.8 NC_005262.1 + 4682 0.68 0.252021
Target:  5'- -cGCG-GCCGGaUCGGGCCGCGgcauccaGUCg -3'
miRNA:   3'- ucCGCuUGGCC-GGCCCGGCGCag-----CGG- -5'
24099 3' -64.8 NC_005262.1 + 59696 0.68 0.252021
Target:  5'- cGGCGuGCCGccacGCgGGcGCUaCGUCGCCg -3'
miRNA:   3'- uCCGCuUGGC----CGgCC-CGGcGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 16585 0.68 0.258069
Target:  5'- cAGGCGcguguGCUGGUCGaGGCgGCGaagcaGCCg -3'
miRNA:   3'- -UCCGCu----UGGCCGGC-CCGgCGCag---CGG- -5'
24099 3' -64.8 NC_005262.1 + 50272 0.68 0.227886
Target:  5'- aGGGCGcgcccgcGCCGGCCGagcccgugacGGCCGCGcggauugaggaGCCg -3'
miRNA:   3'- -UCCGCu------UGGCCGGC----------CCGGCGCag---------CGG- -5'
24099 3' -64.8 NC_005262.1 + 38412 0.68 0.227336
Target:  5'- uGGCGAcaccauccagGCCGGCgCGGucgagaucacGCCGgacgacggcacgcuCGUCGCCg -3'
miRNA:   3'- uCCGCU----------UGGCCG-GCC----------CGGC--------------GCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 51124 0.68 0.234575
Target:  5'- cGGCaGAACgGGCgcaGGguucGCCGCG-CGCCg -3'
miRNA:   3'- uCCG-CUUGgCCGg--CC----CGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 53245 0.68 0.228989
Target:  5'- cGGCuGcGCgCGGCC-GGUCGCGUCGgCa -3'
miRNA:   3'- uCCG-CuUG-GCCGGcCCGGCGCAGCgG- -5'
24099 3' -64.8 NC_005262.1 + 54826 0.68 0.223516
Target:  5'- gGGGUuGGCUGGCUccggauGGGUggagUGCGUCGCCc -3'
miRNA:   3'- -UCCGcUUGGCCGG------CCCG----GCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 21379 0.68 0.252021
Target:  5'- -uGCG-GCCGGCUGGcGCCGCcugaaaGCCg -3'
miRNA:   3'- ucCGCuUGGCCGGCC-CGGCGcag---CGG- -5'
24099 3' -64.8 NC_005262.1 + 4875 0.68 0.252021
Target:  5'- aAGcGCGcgccAUCGGUCGGGCCGCcg-GCCu -3'
miRNA:   3'- -UC-CGCu---UGGCCGGCCCGGCGcagCGG- -5'
24099 3' -64.8 NC_005262.1 + 58605 0.68 0.251422
Target:  5'- cGGuCGcGCCGGCCGcGCCcgcgcccGCGaCGCCg -3'
miRNA:   3'- uCC-GCuUGGCCGGCcCGG-------CGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 14062 0.68 0.24609
Target:  5'- cGGCGucgGugCGGCUucGGCCGCcgguUCGCCg -3'
miRNA:   3'- uCCGC---UugGCCGGc-CCGGCGc---AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 5979 0.68 0.223516
Target:  5'- cGGCuuuuGCCGGCCGGcuGCUGCucGUUGCUc -3'
miRNA:   3'- uCCGcu--UGGCCGGCC--CGGCG--CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 108 0.68 0.260521
Target:  5'- -uGCGcaugucACCGGCCGGcgaccgaccuccauaGCagaaaGCGUCGCCg -3'
miRNA:   3'- ucCGCu-----UGGCCGGCC---------------CGg----CGCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.