miRNA display CGI


Results 101 - 120 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 38894 0.69 0.212904
Target:  5'- cGGCGuccuCCGGCU-GGCCGagcUCGCCu -3'
miRNA:   3'- uCCGCuu--GGCCGGcCCGGCgc-AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 12607 0.69 0.218155
Target:  5'- cGGCuccAGCgGGCC--GCCGCGUCGUCg -3'
miRNA:   3'- uCCGc--UUGgCCGGccCGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 5081 0.69 0.202727
Target:  5'- cGGCGcgugcGACCGGCUcGGCgGUGcgCGCCc -3'
miRNA:   3'- uCCGC-----UUGGCCGGcCCGgCGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 7156 0.69 0.212904
Target:  5'- cAGGCGAAacacCCGGCCGcauGCCGCuacCGCg -3'
miRNA:   3'- -UCCGCUU----GGCCGGCc--CGGCGca-GCGg -5'
24099 3' -64.8 NC_005262.1 + 56639 0.69 0.220286
Target:  5'- cGGC-AugCGGCCGGGUguuucgccuguuugGCGUCGCa -3'
miRNA:   3'- uCCGcUugGCCGGCCCGg-------------CGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 10768 0.69 0.212904
Target:  5'- uGGUGAuccgcCCGcGCCGGGCgCGCGguacUGCUg -3'
miRNA:   3'- uCCGCUu----GGC-CGGCCCG-GCGCa---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 9127 0.69 0.212904
Target:  5'- cGGCuaugaGGACCGgcGCCGGGCCG-GUCGg- -3'
miRNA:   3'- uCCG-----CUUGGC--CGGCCCGGCgCAGCgg -5'
24099 3' -64.8 NC_005262.1 + 56767 0.69 0.204226
Target:  5'- cGGGCGAcgagcgcuacaugaaGCUGGCCGgccugaaGGCCGaCGUCGa- -3'
miRNA:   3'- -UCCGCU---------------UGGCCGGC-------CCGGC-GCAGCgg -5'
24099 3' -64.8 NC_005262.1 + 52613 0.69 0.218155
Target:  5'- cGGGCGAgcugaagcgcACCGGCuCGuGGCgCGCGacCGCa -3'
miRNA:   3'- -UCCGCU----------UGGCCG-GC-CCG-GCGCa-GCGg -5'
24099 3' -64.8 NC_005262.1 + 35165 0.69 0.202727
Target:  5'- cGGGCGAcGCUGGCggcaaugaGGucacgaccGCCGCGUgGCCa -3'
miRNA:   3'- -UCCGCU-UGGCCGg-------CC--------CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 24816 0.69 0.201733
Target:  5'- aAGcGCGAGCucgcgaucgCGGCCGGcGCCGUGccgaucacccugCGCCa -3'
miRNA:   3'- -UC-CGCUUG---------GCCGGCC-CGGCGCa-----------GCGG- -5'
24099 3' -64.8 NC_005262.1 + 14318 0.69 0.197799
Target:  5'- cGGCGGaaccGCCGaGCUGGGCgGCGaagUUGCg -3'
miRNA:   3'- uCCGCU----UGGC-CGGCCCGgCGC---AGCGg -5'
24099 3' -64.8 NC_005262.1 + 5171 0.69 0.197799
Target:  5'- cGGUGA--CGGCCGGcGUCGCGggCGCg -3'
miRNA:   3'- uCCGCUugGCCGGCC-CGGCGCa-GCGg -5'
24099 3' -64.8 NC_005262.1 + 43053 0.69 0.192976
Target:  5'- --uCGAcCCGGCCGGcaCCGCG-CGCCg -3'
miRNA:   3'- uccGCUuGGCCGGCCc-GGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 4329 0.69 0.192976
Target:  5'- cGGCGAGCCucgCGGGCCGUccaucggccGUCGCg -3'
miRNA:   3'- uCCGCUUGGccgGCCCGGCG---------CAGCGg -5'
24099 3' -64.8 NC_005262.1 + 13522 0.69 0.202727
Target:  5'- cGGGCucGGCCGGCgCGGGCgCGCccucGUUGCg -3'
miRNA:   3'- -UCCGc-UUGGCCG-GCCCG-GCG----CAGCGg -5'
24099 3' -64.8 NC_005262.1 + 33709 0.69 0.202727
Target:  5'- cGGCGugUCGucgcccuucuuGCCGGcGUCGuCGUCGCCg -3'
miRNA:   3'- uCCGCuuGGC-----------CGGCC-CGGC-GCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 909 0.69 0.212904
Target:  5'- cGGCGcGCUGG-CGGGUgaugGUGUCGCCc -3'
miRNA:   3'- uCCGCuUGGCCgGCCCGg---CGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 14023 0.69 0.212904
Target:  5'- cGGCGcGGCagCGGCCGGaGCCucgggcgcggGCGcCGCCg -3'
miRNA:   3'- uCCGC-UUG--GCCGGCC-CGG----------CGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 34123 0.69 0.212904
Target:  5'- -cGCGggUUGGgCGGGCUGCGcgggCGCg -3'
miRNA:   3'- ucCGCuuGGCCgGCCCGGCGCa---GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.