Results 81 - 100 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 51124 | 0.68 | 0.234575 |
Target: 5'- cGGCaGAACgGGCgcaGGguucGCCGCG-CGCCg -3' miRNA: 3'- uCCG-CUUGgCCGg--CC----CGGCGCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 21379 | 0.68 | 0.252021 |
Target: 5'- -uGCG-GCCGGCUGGcGCCGCcugaaaGCCg -3' miRNA: 3'- ucCGCuUGGCCGGCC-CGGCGcag---CGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 39583 | 0.68 | 0.252021 |
Target: 5'- cGGCGuGCCGGCgCaGcGUCGCGgcugcCGCCu -3' miRNA: 3'- uCCGCuUGGCCG-GcC-CGGCGCa----GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 46799 | 0.68 | 0.228437 |
Target: 5'- cGGCGAGCCGaugaCCGacgugcaGGcCCGCGcgcUCGCCg -3' miRNA: 3'- uCCGCUUGGCc---GGC-------CC-GGCGC---AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 108 | 0.68 | 0.260521 |
Target: 5'- -uGCGcaugucACCGGCCGGcgaccgaccuccauaGCagaaaGCGUCGCCg -3' miRNA: 3'- ucCGCu-----UGGCCGGCC---------------CGg----CGCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 16585 | 0.68 | 0.258069 |
Target: 5'- cAGGCGcguguGCUGGUCGaGGCgGCGaagcaGCCg -3' miRNA: 3'- -UCCGCu----UGGCCGGC-CCGgCGCag---CGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 59696 | 0.68 | 0.252021 |
Target: 5'- cGGCGuGCCGccacGCgGGcGCUaCGUCGCCg -3' miRNA: 3'- uCCGCuUGGC----CGgCC-CGGcGCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 29944 | 0.68 | 0.252021 |
Target: 5'- aAGGaCGAcCCGGaCgCGGGCgGCGgcgaaggUGCCa -3' miRNA: 3'- -UCC-GCUuGGCC-G-GCCCGgCGCa------GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 4682 | 0.68 | 0.252021 |
Target: 5'- -cGCG-GCCGGaUCGGGCCGCGgcauccaGUCg -3' miRNA: 3'- ucCGCuUGGCC-GGCCCGGCGCag-----CGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 43670 | 0.68 | 0.252021 |
Target: 5'- uGGCGAccugaacgcaaGCCaaGCCGGGCCGaauUCGCg -3' miRNA: 3'- uCCGCU-----------UGGc-CGGCCCGGCgc-AGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 24898 | 0.68 | 0.240275 |
Target: 5'- cAGGCGAGCuCGGCCa-GCCGgagGaCGCCg -3' miRNA: 3'- -UCCGCUUG-GCCGGccCGGCg--CaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 55625 | 0.68 | 0.234575 |
Target: 5'- -uGCGcAGCaagaaGCCGGGCCGCG-CGCUc -3' miRNA: 3'- ucCGC-UUGgc---CGGCCCGGCGCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 41651 | 0.68 | 0.258069 |
Target: 5'- cGGCGAugCGGgCa-GCCGCGgcgGCCa -3' miRNA: 3'- uCCGCUugGCCgGccCGGCGCag-CGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 38412 | 0.68 | 0.227336 |
Target: 5'- uGGCGAcaccauccagGCCGGCgCGGucgagaucacGCCGgacgacggcacgcuCGUCGCCg -3' miRNA: 3'- uCCGCU----------UGGCCG-GCC----------CGGC--------------GCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 5979 | 0.68 | 0.223516 |
Target: 5'- cGGCuuuuGCCGGCCGGcuGCUGCucGUUGCUc -3' miRNA: 3'- uCCGcu--UGGCCGGCC--CGGCG--CAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 50272 | 0.68 | 0.227886 |
Target: 5'- aGGGCGcgcccgcGCCGGCCGagcccgugacGGCCGCGcggauugaggaGCCg -3' miRNA: 3'- -UCCGCu------UGGCCGGC----------CCGGCGCag---------CGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 53698 | 0.68 | 0.228437 |
Target: 5'- cGGGCGcgcagaacCCGGCCGcgucgaaGGCCGUGgCGCUc -3' miRNA: 3'- -UCCGCuu------GGCCGGC-------CCGGCGCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 8261 | 0.68 | 0.234011 |
Target: 5'- -cGCGAAagcagCGGCCGaGGaagcugcCCGCGUCGCUc -3' miRNA: 3'- ucCGCUUg----GCCGGC-CC-------GGCGCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 40565 | 0.67 | 0.296867 |
Target: 5'- cGGGCaacACCGG-CGGuGCCGCGaccgUCGCg -3' miRNA: 3'- -UCCGcu-UGGCCgGCC-CGGCGC----AGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 4125 | 0.67 | 0.283452 |
Target: 5'- -cGCGAaaGCCGGgcauaaaaaaaCGGcGCCGCGUggCGCCg -3' miRNA: 3'- ucCGCU--UGGCCg----------GCC-CGGCGCA--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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