miRNA display CGI


Results 41 - 60 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 23413 0.7 0.174701
Target:  5'- -cGCGAACgCGGCagacaGGCCGUcgacGUCGCCg -3'
miRNA:   3'- ucCGCUUG-GCCGgc---CCGGCG----CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 32700 0.7 0.17912
Target:  5'- gAGGUaGGAUU-GUCGGGCCGCGgcUCGCCc -3'
miRNA:   3'- -UCCG-CUUGGcCGGCCCGGCGC--AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 35917 0.7 0.17912
Target:  5'- aGGGCGGucUUGGCUcGGCCGCcUUGCCg -3'
miRNA:   3'- -UCCGCUu-GGCCGGcCCGGCGcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 10090 0.7 0.17912
Target:  5'- cGGCcuucGACgCGGCCGGGUucUGCG-CGCCc -3'
miRNA:   3'- uCCGc---UUG-GCCGGCCCG--GCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 35829 0.7 0.17912
Target:  5'- uGGGcCGGAgCGGCguCGGcGCCGCGacCGCCc -3'
miRNA:   3'- -UCC-GCUUgGCCG--GCC-CGGCGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 16872 0.7 0.17912
Target:  5'- cAGGCGcccGGCCGcgcGCCGGGCCGCaccacacCGCa -3'
miRNA:   3'- -UCCGC---UUGGC---CGGCCCGGCGca-----GCGg -5'
24099 3' -64.8 NC_005262.1 + 63307 0.7 0.183638
Target:  5'- cGGCGucGACgUGGaacaCGcGcGCCGCGUCGCCg -3'
miRNA:   3'- uCCGC--UUG-GCCg---GC-C-CGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 49774 0.7 0.188256
Target:  5'- gAGGCu--CCGGCCGcuGCCGCGccggaCGCCc -3'
miRNA:   3'- -UCCGcuuGGCCGGCc-CGGCGCa----GCGG- -5'
24099 3' -64.8 NC_005262.1 + 38961 0.7 0.188256
Target:  5'- aGGGUGAucgGCaCGGCgCcGGCCGCGaUCGCg -3'
miRNA:   3'- -UCCGCU---UG-GCCG-GcCCGGCGC-AGCGg -5'
24099 3' -64.8 NC_005262.1 + 43053 0.69 0.192976
Target:  5'- --uCGAcCCGGCCGGcaCCGCG-CGCCg -3'
miRNA:   3'- uccGCUuGGCCGGCCc-GGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 4329 0.69 0.192976
Target:  5'- cGGCGAGCCucgCGGGCCGUccaucggccGUCGCg -3'
miRNA:   3'- uCCGCUUGGccgGCCCGGCG---------CAGCGg -5'
24099 3' -64.8 NC_005262.1 + 25369 0.69 0.195857
Target:  5'- cGGCGugaucucgaccgcGCCGGCCuGGaUgGUGUCGCCa -3'
miRNA:   3'- uCCGCu------------UGGCCGGcCC-GgCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 14318 0.69 0.197799
Target:  5'- cGGCGGaaccGCCGaGCUGGGCgGCGaagUUGCg -3'
miRNA:   3'- uCCGCU----UGGC-CGGCCCGgCGC---AGCGg -5'
24099 3' -64.8 NC_005262.1 + 5171 0.69 0.197799
Target:  5'- cGGUGA--CGGCCGGcGUCGCGggCGCg -3'
miRNA:   3'- uCCGCUugGCCGGCC-CGGCGCa-GCGg -5'
24099 3' -64.8 NC_005262.1 + 23459 0.69 0.201733
Target:  5'- -aGCGcGCCGGCCGuGaGCCGaugcucgaagcgGUCGCCg -3'
miRNA:   3'- ucCGCuUGGCCGGC-C-CGGCg-----------CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 24816 0.69 0.201733
Target:  5'- aAGcGCGAGCucgcgaucgCGGCCGGcGCCGUGccgaucacccugCGCCa -3'
miRNA:   3'- -UC-CGCUUG---------GCCGGCC-CGGCGCa-----------GCGG- -5'
24099 3' -64.8 NC_005262.1 + 35165 0.69 0.202727
Target:  5'- cGGGCGAcGCUGGCggcaaugaGGucacgaccGCCGCGUgGCCa -3'
miRNA:   3'- -UCCGCU-UGGCCGg-------CC--------CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 13522 0.69 0.202727
Target:  5'- cGGGCucGGCCGGCgCGGGCgCGCccucGUUGCg -3'
miRNA:   3'- -UCCGc-UUGGCCG-GCCCG-GCG----CAGCGg -5'
24099 3' -64.8 NC_005262.1 + 5081 0.69 0.202727
Target:  5'- cGGCGcgugcGACCGGCUcGGCgGUGcgCGCCc -3'
miRNA:   3'- uCCGC-----UUGGCCGGcCCGgCGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 33709 0.69 0.202727
Target:  5'- cGGCGugUCGucgcccuucuuGCCGGcGUCGuCGUCGCCg -3'
miRNA:   3'- uCCGCuuGGC-----------CGGCC-CGGC-GCAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.