Results 101 - 120 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 3989 | 0.67 | 0.264235 |
Target: 5'- uGGCGccuGCgGGCCGGuGCCcucgaggaacGCGUUGaCCu -3' miRNA: 3'- uCCGCu--UGgCCGGCC-CGG----------CGCAGC-GG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 46541 | 0.67 | 0.264235 |
Target: 5'- cAGcGCGGcGCCGGCCGccgcucCCGCGaCGCCc -3' miRNA: 3'- -UC-CGCU-UGGCCGGCcc----GGCGCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 50407 | 0.67 | 0.264235 |
Target: 5'- cGGCGAucagcGCCGcggaGCgcgaGGGCCGCGUgcaCGUCg -3' miRNA: 3'- uCCGCU-----UGGC----CGg---CCCGGCGCA---GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 35518 | 0.67 | 0.266109 |
Target: 5'- uGGGUGGGCCacguggcagggcuucGGCCaaGCCGCGaugucgcUCGCCg -3' miRNA: 3'- -UCCGCUUGG---------------CCGGccCGGCGC-------AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 15113 | 0.67 | 0.270521 |
Target: 5'- cGGCGu-CCGGCUGGaaCGCGcUgGCCg -3' miRNA: 3'- uCCGCuuGGCCGGCCcgGCGC-AgCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 11634 | 0.67 | 0.270521 |
Target: 5'- cGGCGucgaGGCCGGGguaguugCGCGcCGCCu -3' miRNA: 3'- uCCGCuuggCCGGCCCg------GCGCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 34783 | 0.67 | 0.270521 |
Target: 5'- cGGCGGAUCGGUgaaGGuGUgGCuUCGCCu -3' miRNA: 3'- uCCGCUUGGCCGg--CC-CGgCGcAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 13769 | 0.67 | 0.270521 |
Target: 5'- cGGC--GCCGGCuCGGGCUucacuucgGUGggCGCCg -3' miRNA: 3'- uCCGcuUGGCCG-GCCCGG--------CGCa-GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 34866 | 0.67 | 0.273069 |
Target: 5'- uGGCGAcgcugcccuguuccuGCCGuGCCuGGaUCGCGaCGCCg -3' miRNA: 3'- uCCGCU---------------UGGC-CGGcCC-GGCGCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 11411 | 0.67 | 0.274992 |
Target: 5'- aAGcCGcGCCGcGCCGGGCCGCcgaaggugcgcgacaCGCCg -3' miRNA: 3'- -UCcGCuUGGC-CGGCCCGGCGca-------------GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 21004 | 0.67 | 0.276926 |
Target: 5'- cGGGCGAcgcGCCGGagaCGauguagggcuGGCCGUccGUCGCg -3' miRNA: 3'- -UCCGCU---UGGCCg--GC----------CCGGCG--CAGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 4795 | 0.67 | 0.276926 |
Target: 5'- cGGGaucgGAGCCGGCCGcGuaGCGcugguuUCGCCg -3' miRNA: 3'- -UCCg---CUUGGCCGGCcCggCGC------AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 19662 | 0.67 | 0.276926 |
Target: 5'- -cGCGu-CCGGCCGGaaCGCGggaaCGCCg -3' miRNA: 3'- ucCGCuuGGCCGGCCcgGCGCa---GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 51379 | 0.67 | 0.276926 |
Target: 5'- -cGCGAcGCCGGCCaaGGCCGCGcCuGaCCg -3' miRNA: 3'- ucCGCU-UGGCCGGc-CCGGCGCaG-C-GG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 17913 | 0.67 | 0.276926 |
Target: 5'- cGGCGAGCCGccgaUCGGcGCCGa--CGCCa -3' miRNA: 3'- uCCGCUUGGCc---GGCC-CGGCgcaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 16086 | 0.67 | 0.282794 |
Target: 5'- cGGCGAGCCgccgcccGGCgCGGuGCUugGCGUcagacCGCCg -3' miRNA: 3'- uCCGCUUGG-------CCG-GCC-CGG--CGCA-----GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 29434 | 0.67 | 0.282794 |
Target: 5'- cAGGCGAagGCCcGCaaGGCUGCGgcagaggcgcaggUCGCCg -3' miRNA: 3'- -UCCGCU--UGGcCGgcCCGGCGC-------------AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 4125 | 0.67 | 0.283452 |
Target: 5'- -cGCGAaaGCCGGgcauaaaaaaaCGGcGCCGCGUggCGCCg -3' miRNA: 3'- ucCGCU--UGGCCg----------GCC-CGGCGCA--GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 987 | 0.67 | 0.283452 |
Target: 5'- uGGCGAccuGCgGGgCGGGgCGguguagagcuUGUCGCCg -3' miRNA: 3'- uCCGCU---UGgCCgGCCCgGC----------GCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 35363 | 0.67 | 0.283452 |
Target: 5'- cGGCGAGCaCGGCgCGGcCCGauUCGaCCu -3' miRNA: 3'- uCCGCUUG-GCCG-GCCcGGCgcAGC-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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