miRNA display CGI


Results 61 - 80 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 17913 0.67 0.276926
Target:  5'- cGGCGAGCCGccgaUCGGcGCCGa--CGCCa -3'
miRNA:   3'- uCCGCUUGGCc---GGCC-CGGCgcaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 11411 0.67 0.274992
Target:  5'- aAGcCGcGCCGcGCCGGGCCGCcgaaggugcgcgacaCGCCg -3'
miRNA:   3'- -UCcGCuUGGC-CGGCCCGGCGca-------------GCGG- -5'
24099 3' -64.8 NC_005262.1 + 34866 0.67 0.273069
Target:  5'- uGGCGAcgcugcccuguuccuGCCGuGCCuGGaUCGCGaCGCCg -3'
miRNA:   3'- uCCGCU---------------UGGC-CGGcCC-GGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 15113 0.67 0.270521
Target:  5'- cGGCGu-CCGGCUGGaaCGCGcUgGCCg -3'
miRNA:   3'- uCCGCuuGGCCGGCCcgGCGC-AgCGG- -5'
24099 3' -64.8 NC_005262.1 + 34783 0.67 0.270521
Target:  5'- cGGCGGAUCGGUgaaGGuGUgGCuUCGCCu -3'
miRNA:   3'- uCCGCUUGGCCGg--CC-CGgCGcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 13769 0.67 0.270521
Target:  5'- cGGC--GCCGGCuCGGGCUucacuucgGUGggCGCCg -3'
miRNA:   3'- uCCGcuUGGCCG-GCCCGG--------CGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 11634 0.67 0.270521
Target:  5'- cGGCGucgaGGCCGGGguaguugCGCGcCGCCu -3'
miRNA:   3'- uCCGCuuggCCGGCCCg------GCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 35518 0.67 0.266109
Target:  5'- uGGGUGGGCCacguggcagggcuucGGCCaaGCCGCGaugucgcUCGCCg -3'
miRNA:   3'- -UCCGCUUGG---------------CCGGccCGGCGC-------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 49935 0.67 0.264235
Target:  5'- cAGaCGAcgaCGGCCGGuGCUGCGccaucgagUCGCCg -3'
miRNA:   3'- -UCcGCUug-GCCGGCC-CGGCGC--------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 3989 0.67 0.264235
Target:  5'- uGGCGccuGCgGGCCGGuGCCcucgaggaacGCGUUGaCCu -3'
miRNA:   3'- uCCGCu--UGgCCGGCC-CGG----------CGCAGC-GG- -5'
24099 3' -64.8 NC_005262.1 + 46541 0.67 0.264235
Target:  5'- cAGcGCGGcGCCGGCCGccgcucCCGCGaCGCCc -3'
miRNA:   3'- -UC-CGCU-UGGCCGGCcc----GGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 50407 0.67 0.264235
Target:  5'- cGGCGAucagcGCCGcggaGCgcgaGGGCCGCGUgcaCGUCg -3'
miRNA:   3'- uCCGCU-----UGGC----CGg---CCCGGCGCA---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 21646 0.67 0.264235
Target:  5'- cGGCcgcGACCGGgcCCGGcGCCGCGUaGaCCg -3'
miRNA:   3'- uCCGc--UUGGCC--GGCC-CGGCGCAgC-GG- -5'
24099 3' -64.8 NC_005262.1 + 108 0.68 0.260521
Target:  5'- -uGCGcaugucACCGGCCGGcgaccgaccuccauaGCagaaaGCGUCGCCg -3'
miRNA:   3'- ucCGCu-----UGGCCGGCC---------------CGg----CGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 41651 0.68 0.258069
Target:  5'- cGGCGAugCGGgCa-GCCGCGgcgGCCa -3'
miRNA:   3'- uCCGCUugGCCgGccCGGCGCag-CGG- -5'
24099 3' -64.8 NC_005262.1 + 16585 0.68 0.258069
Target:  5'- cAGGCGcguguGCUGGUCGaGGCgGCGaagcaGCCg -3'
miRNA:   3'- -UCCGCu----UGGCCGGC-CCGgCGCag---CGG- -5'
24099 3' -64.8 NC_005262.1 + 4682 0.68 0.252021
Target:  5'- -cGCG-GCCGGaUCGGGCCGCGgcauccaGUCg -3'
miRNA:   3'- ucCGCuUGGCC-GGCCCGGCGCag-----CGG- -5'
24099 3' -64.8 NC_005262.1 + 29944 0.68 0.252021
Target:  5'- aAGGaCGAcCCGGaCgCGGGCgGCGgcgaaggUGCCa -3'
miRNA:   3'- -UCC-GCUuGGCC-G-GCCCGgCGCa------GCGG- -5'
24099 3' -64.8 NC_005262.1 + 59696 0.68 0.252021
Target:  5'- cGGCGuGCCGccacGCgGGcGCUaCGUCGCCg -3'
miRNA:   3'- uCCGCuUGGC----CGgCC-CGGcGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 43670 0.68 0.252021
Target:  5'- uGGCGAccugaacgcaaGCCaaGCCGGGCCGaauUCGCg -3'
miRNA:   3'- uCCGCU-----------UGGc-CGGCCCGGCgc-AGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.