miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 12607 0.69 0.218155
Target:  5'- cGGCuccAGCgGGCC--GCCGCGUCGUCg -3'
miRNA:   3'- uCCGc--UUGgCCGGccCGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 13225 0.66 0.323701
Target:  5'- cGGC-AGCgGGCuCGGGCUGCGguugaacgggugCGCg -3'
miRNA:   3'- uCCGcUUGgCCG-GCCCGGCGCa-----------GCGg -5'
24099 3' -64.8 NC_005262.1 + 13399 0.68 0.234575
Target:  5'- cGGCGcuGAUCGccGCgCGGuuCGCGUCGCCa -3'
miRNA:   3'- uCCGC--UUGGC--CG-GCCcgGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 13480 0.66 0.347669
Target:  5'- cGGCGGGCgcugCGGCCGGcuccucaauCCGCG-CgGCCg -3'
miRNA:   3'- uCCGCUUG----GCCGGCCc--------GGCGCaG-CGG- -5'
24099 3' -64.8 NC_005262.1 + 13522 0.69 0.202727
Target:  5'- cGGGCucGGCCGGCgCGGGCgCGCccucGUUGCg -3'
miRNA:   3'- -UCCGc-UUGGCCG-GCCCG-GCG----CAGCGg -5'
24099 3' -64.8 NC_005262.1 + 13769 0.67 0.270521
Target:  5'- cGGC--GCCGGCuCGGGCUucacuucgGUGggCGCCg -3'
miRNA:   3'- uCCGcuUGGCCG-GCCCGG--------CGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 14023 0.69 0.212904
Target:  5'- cGGCGcGGCagCGGCCGGaGCCucgggcgcggGCGcCGCCg -3'
miRNA:   3'- uCCGC-UUG--GCCGGCC-CGG----------CGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 14062 0.68 0.24609
Target:  5'- cGGCGucgGugCGGCUucGGCCGCcgguUCGCCg -3'
miRNA:   3'- uCCGC---UugGCCGGc-CCGGCGc---AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 14318 0.69 0.197799
Target:  5'- cGGCGGaaccGCCGaGCUGGGCgGCGaagUUGCg -3'
miRNA:   3'- uCCGCU----UGGC-CGGCCCGgCGC---AGCGg -5'
24099 3' -64.8 NC_005262.1 + 15113 0.67 0.270521
Target:  5'- cGGCGu-CCGGCUGGaaCGCGcUgGCCg -3'
miRNA:   3'- uCCGCuuGGCCGGCCcgGCGC-AgCGG- -5'
24099 3' -64.8 NC_005262.1 + 15762 0.72 0.125552
Target:  5'- -uGCGGGCgCGGCCGGcuGCUGCGUgGUCu -3'
miRNA:   3'- ucCGCUUG-GCCGGCC--CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 16086 0.67 0.282794
Target:  5'- cGGCGAGCCgccgcccGGCgCGGuGCUugGCGUcagacCGCCg -3'
miRNA:   3'- uCCGCUUGG-------CCG-GCC-CGG--CGCA-----GCGG- -5'
24099 3' -64.8 NC_005262.1 + 16585 0.68 0.258069
Target:  5'- cAGGCGcguguGCUGGUCGaGGCgGCGaagcaGCCg -3'
miRNA:   3'- -UCCGCu----UGGCCGGC-CCGgCGCag---CGG- -5'
24099 3' -64.8 NC_005262.1 + 16872 0.7 0.17912
Target:  5'- cAGGCGcccGGCCGcgcGCCGGGCCGCaccacacCGCa -3'
miRNA:   3'- -UCCGC---UUGGC---CGGCCCGGCGca-----GCGg -5'
24099 3' -64.8 NC_005262.1 + 16973 0.66 0.320793
Target:  5'- cGGGCaccGAuauugcccugcugccGCCGGCCGaGCgCGCGcUCGUCg -3'
miRNA:   3'- -UCCG---CU---------------UGGCCGGCcCG-GCGC-AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 17062 0.67 0.290099
Target:  5'- cGGCGAucgauCCGGUCGuGCCGgauugCGCCg -3'
miRNA:   3'- uCCGCUu----GGCCGGCcCGGCgca--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 17260 0.73 0.114394
Target:  5'- cGGCGGccggcGCCGcGCUGGGCUgcugcgcgggcagggGCGUCGCg -3'
miRNA:   3'- uCCGCU-----UGGC-CGGCCCGG---------------CGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 17687 0.76 0.066874
Target:  5'- cGGCGAagaaGCCGGCCGuGGUCGC-UgGCCc -3'
miRNA:   3'- uCCGCU----UGGCCGGC-CCGGCGcAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 17913 0.67 0.276926
Target:  5'- cGGCGAGCCGccgaUCGGcGCCGa--CGCCa -3'
miRNA:   3'- uCCGCUUGGCc---GGCC-CGGCgcaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 19106 0.76 0.068496
Target:  5'- cGGCGAugCcacguucggaucgGGCgCGGG-CGCGUCGCCg -3'
miRNA:   3'- uCCGCUugG-------------CCG-GCCCgGCGCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.