miRNA display CGI


Results 61 - 80 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 19662 0.67 0.276926
Target:  5'- -cGCGu-CCGGCCGGaaCGCGggaaCGCCg -3'
miRNA:   3'- ucCGCuuGGCCGGCCcgGCGCa---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 19969 0.81 0.024642
Target:  5'- -cGCGcGGCCGGcCCGcGGCCGUGUCGCCg -3'
miRNA:   3'- ucCGC-UUGGCC-GGC-CCGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 20743 0.71 0.146409
Target:  5'- cGGCGcgcgguGCCGGCCGGGUCGaUGUacucguaGCUg -3'
miRNA:   3'- uCCGCu-----UGGCCGGCCCGGC-GCAg------CGG- -5'
24099 3' -64.8 NC_005262.1 + 21004 0.67 0.276926
Target:  5'- cGGGCGAcgcGCCGGagaCGauguagggcuGGCCGUccGUCGCg -3'
miRNA:   3'- -UCCGCU---UGGCCg--GC----------CCGGCG--CAGCGg -5'
24099 3' -64.8 NC_005262.1 + 21343 0.72 0.132179
Target:  5'- gAGGCGAucgaGgCGGCCaaGGCCGCG-CGCa -3'
miRNA:   3'- -UCCGCU----UgGCCGGc-CCGGCGCaGCGg -5'
24099 3' -64.8 NC_005262.1 + 21379 0.68 0.252021
Target:  5'- -uGCG-GCCGGCUGGcGCCGCcugaaaGCCg -3'
miRNA:   3'- ucCGCuUGGCCGGCC-CGGCGcag---CGG- -5'
24099 3' -64.8 NC_005262.1 + 21510 0.66 0.317905
Target:  5'- -cGCGAgaacacgucGCCGGugcCCGuGCCGCucGUCGCCg -3'
miRNA:   3'- ucCGCU---------UGGCC---GGCcCGGCG--CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 21646 0.67 0.264235
Target:  5'- cGGCcgcGACCGGgcCCGGcGCCGCGUaGaCCg -3'
miRNA:   3'- uCCGc--UUGGCC--GGCC-CGGCGCAgC-GG- -5'
24099 3' -64.8 NC_005262.1 + 22233 0.66 0.317905
Target:  5'- cGGCcGcgccgcccacGCCGGCCGGcCUGCGcaucacgccgUCGCCa -3'
miRNA:   3'- uCCGcU----------UGGCCGGCCcGGCGC----------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 22310 0.66 0.301677
Target:  5'- cGGUGAcggugugauugugcGCCGGCaucuGGGCUGCGgucagCGUa -3'
miRNA:   3'- uCCGCU--------------UGGCCGg---CCCGGCGCa----GCGg -5'
24099 3' -64.8 NC_005262.1 + 23409 0.76 0.066874
Target:  5'- cGGCGAugCGGCgGGcagcaugaGCCGCGUCaucgaGCCg -3'
miRNA:   3'- uCCGCUugGCCGgCC--------CGGCGCAG-----CGG- -5'
24099 3' -64.8 NC_005262.1 + 23413 0.7 0.174701
Target:  5'- -cGCGAACgCGGCagacaGGCCGUcgacGUCGCCg -3'
miRNA:   3'- ucCGCUUG-GCCGgc---CCGGCG----CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 23459 0.69 0.201733
Target:  5'- -aGCGcGCCGGCCGuGaGCCGaugcucgaagcgGUCGCCg -3'
miRNA:   3'- ucCGCuUGGCCGGC-C-CGGCg-----------CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 24816 0.69 0.201733
Target:  5'- aAGcGCGAGCucgcgaucgCGGCCGGcGCCGUGccgaucacccugCGCCa -3'
miRNA:   3'- -UC-CGCUUG---------GCCGGCC-CGGCGCa-----------GCGG- -5'
24099 3' -64.8 NC_005262.1 + 24898 0.68 0.240275
Target:  5'- cAGGCGAGCuCGGCCa-GCCGgagGaCGCCg -3'
miRNA:   3'- -UCCGCUUG-GCCGGccCGGCg--CaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 25369 0.69 0.195857
Target:  5'- cGGCGugaucucgaccgcGCCGGCCuGGaUgGUGUCGCCa -3'
miRNA:   3'- uCCGCu------------UGGCCGGcCC-GgCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 27479 0.68 0.245503
Target:  5'- cGGCGAgcgcACCGGCCccccaccgaagucGaccgaGGUguuCGCGUCGCCg -3'
miRNA:   3'- uCCGCU----UGGCCGG-------------C-----CCG---GCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 27547 0.66 0.317186
Target:  5'- aGGGCGAGcucagccCCGGCgaGGacGCCGCGcagCGCg -3'
miRNA:   3'- -UCCGCUU-------GGCCGg-CC--CGGCGCa--GCGg -5'
24099 3' -64.8 NC_005262.1 + 27828 0.66 0.347669
Target:  5'- aAGcGCG-GCCGGUCugacuucaaGGugcuGCCGCGUCGCa -3'
miRNA:   3'- -UC-CGCuUGGCCGG---------CC----CGGCGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 28427 0.75 0.070529
Target:  5'- gAGGuCGAAUCgGGCCGcGCCGUGcUCGCCg -3'
miRNA:   3'- -UCC-GCUUGG-CCGGCcCGGCGC-AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.