miRNA display CGI


Results 81 - 100 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 29434 0.67 0.282794
Target:  5'- cAGGCGAagGCCcGCaaGGCUGCGgcagaggcgcaggUCGCCg -3'
miRNA:   3'- -UCCGCU--UGGcCGgcCCGGCGC-------------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 29646 0.66 0.322973
Target:  5'- cGGCGAcgGCCGG-CGGGUagacguagaagaugCGCGgugCGCg -3'
miRNA:   3'- uCCGCU--UGGCCgGCCCG--------------GCGCa--GCGg -5'
24099 3' -64.8 NC_005262.1 + 29944 0.68 0.252021
Target:  5'- aAGGaCGAcCCGGaCgCGGGCgGCGgcgaaggUGCCa -3'
miRNA:   3'- -UCC-GCUuGGCC-G-GCCCGgCGCa------GCGG- -5'
24099 3' -64.8 NC_005262.1 + 30095 0.72 0.119234
Target:  5'- aGGGCGAcgacacGCCGGCC--GCCGCGaaGCCc -3'
miRNA:   3'- -UCCGCU------UGGCCGGccCGGCGCagCGG- -5'
24099 3' -64.8 NC_005262.1 + 30399 0.67 0.290099
Target:  5'- uGGCGccugcGACCuugaGCUGGGCgGCGUCGaCg -3'
miRNA:   3'- uCCGC-----UUGGc---CGGCCCGgCGCAGCgG- -5'
24099 3' -64.8 NC_005262.1 + 30931 0.73 0.105811
Target:  5'- cGGCGAACgcuCGGCgccgcacgugCGGGCCGaaaccuugucgccgaCGUCGCCg -3'
miRNA:   3'- uCCGCUUG---GCCG----------GCCCGGC---------------GCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 32583 0.66 0.324431
Target:  5'- cAGGCGcgcgaucuugccuGACUuGUCGGcgagcgugaucGUCGCGUCGCCg -3'
miRNA:   3'- -UCCGC-------------UUGGcCGGCC-----------CGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 32700 0.7 0.17912
Target:  5'- gAGGUaGGAUU-GUCGGGCCGCGgcUCGCCc -3'
miRNA:   3'- -UCCG-CUUGGcCGGCCCGGCGC--AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 33709 0.69 0.202727
Target:  5'- cGGCGugUCGucgcccuucuuGCCGGcGUCGuCGUCGCCg -3'
miRNA:   3'- uCCGCuuGGC-----------CGGCC-CGGC-GCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 33739 0.66 0.303757
Target:  5'- aAGGCGaAGCUcGCCgaaGGcGCUGCGUaaCGCCa -3'
miRNA:   3'- -UCCGC-UUGGcCGG---CC-CGGCGCA--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 34005 0.72 0.135612
Target:  5'- gGGcGCGGACgGcgugacGCCGGGCCGCaucGUgCGCCg -3'
miRNA:   3'- -UC-CGCUUGgC------CGGCCCGGCG---CA-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 34123 0.69 0.212904
Target:  5'- -cGCGggUUGGgCGGGCUGCGcgggCGCg -3'
miRNA:   3'- ucCGCuuGGCCgGCCCGGCGCa---GCGg -5'
24099 3' -64.8 NC_005262.1 + 34626 0.7 0.162022
Target:  5'- cGGCGA--CGGCCGccugacgcauGGUCGCG-CGCCa -3'
miRNA:   3'- uCCGCUugGCCGGC----------CCGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 34783 0.67 0.270521
Target:  5'- cGGCGGAUCGGUgaaGGuGUgGCuUCGCCu -3'
miRNA:   3'- uCCGCUUGGCCGg--CC-CGgCGcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 34866 0.67 0.273069
Target:  5'- uGGCGAcgcugcccuguuccuGCCGuGCCuGGaUCGCGaCGCCg -3'
miRNA:   3'- uCCGCU---------------UGGC-CGGcCC-GGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 35165 0.69 0.202727
Target:  5'- cGGGCGAcGCUGGCggcaaugaGGucacgaccGCCGCGUgGCCa -3'
miRNA:   3'- -UCCGCU-UGGCCGg-------CC--------CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 35363 0.67 0.283452
Target:  5'- cGGCGAGCaCGGCgCGGcCCGauUCGaCCu -3'
miRNA:   3'- uCCGCUUG-GCCG-GCCcGGCgcAGC-GG- -5'
24099 3' -64.8 NC_005262.1 + 35518 0.67 0.266109
Target:  5'- uGGGUGGGCCacguggcagggcuucGGCCaaGCCGCGaugucgcUCGCCg -3'
miRNA:   3'- -UCCGCUUGG---------------CCGGccCGGCGC-------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 35829 0.7 0.17912
Target:  5'- uGGGcCGGAgCGGCguCGGcGCCGCGacCGCCc -3'
miRNA:   3'- -UCC-GCUUgGCCG--GCC-CGGCGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 35917 0.7 0.17912
Target:  5'- aGGGCGGucUUGGCUcGGCCGCcUUGCCg -3'
miRNA:   3'- -UCCGCUu-GGCCGGcCCGGCGcAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.