miRNA display CGI


Results 101 - 120 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 36873 0.72 0.135612
Target:  5'- cGGCGAAuCCGGCuCGGGau-CGUCGCg -3'
miRNA:   3'- uCCGCUU-GGCCG-GCCCggcGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 38045 0.66 0.340045
Target:  5'- -cGCGGGCCGugagcggcuuGCCGGcCUGCGcgaUCGCCu -3'
miRNA:   3'- ucCGCUUGGC----------CGGCCcGGCGC---AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 38412 0.68 0.227336
Target:  5'- uGGCGAcaccauccagGCCGGCgCGGucgagaucacGCCGgacgacggcacgcuCGUCGCCg -3'
miRNA:   3'- uCCGCU----------UGGCCG-GCC----------CGGC--------------GCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 38894 0.69 0.212904
Target:  5'- cGGCGuccuCCGGCU-GGCCGagcUCGCCu -3'
miRNA:   3'- uCCGCuu--GGCCGGcCCGGCgc-AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 38961 0.7 0.188256
Target:  5'- aGGGUGAucgGCaCGGCgCcGGCCGCGaUCGCg -3'
miRNA:   3'- -UCCGCU---UG-GCCG-GcCCGGCGC-AGCGg -5'
24099 3' -64.8 NC_005262.1 + 39583 0.68 0.252021
Target:  5'- cGGCGuGCCGGCgCaGcGUCGCGgcugcCGCCu -3'
miRNA:   3'- uCCGCuUGGCCG-GcC-CGGCGCa----GCGG- -5'
24099 3' -64.8 NC_005262.1 + 39943 0.76 0.060104
Target:  5'- cGGGCGGcACCGGCaaGGGCgGCGU-GCCg -3'
miRNA:   3'- -UCCGCU-UGGCCGg-CCCGgCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 40318 0.71 0.151711
Target:  5'- cGGGCGAACCucGCCcagccauucguccaGGCCGCGcaugCGCCa -3'
miRNA:   3'- -UCCGCUUGGc-CGGc-------------CCGGCGCa---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 40565 0.67 0.296867
Target:  5'- cGGGCaacACCGG-CGGuGCCGCGaccgUCGCg -3'
miRNA:   3'- -UCCGcu-UGGCCgGCC-CGGCGC----AGCGg -5'
24099 3' -64.8 NC_005262.1 + 41559 0.72 0.119234
Target:  5'- cAGGCcGGCCGGCgUGGGCgGCG-CgGCCg -3'
miRNA:   3'- -UCCGcUUGGCCG-GCCCGgCGCaG-CGG- -5'
24099 3' -64.8 NC_005262.1 + 41651 0.68 0.258069
Target:  5'- cGGCGAugCGGgCa-GCCGCGgcgGCCa -3'
miRNA:   3'- uCCGCUugGCCgGccCGGCGCag-CGG- -5'
24099 3' -64.8 NC_005262.1 + 41947 0.66 0.347669
Target:  5'- cGGGCGAAaucCCGcGCCuuguGCCGCGccugUUGCCu -3'
miRNA:   3'- -UCCGCUU---GGC-CGGcc--CGGCGC----AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 42151 0.66 0.332543
Target:  5'- cGGCGccgggcCCGGUCGcGGCCGa-UCGUCu -3'
miRNA:   3'- uCCGCuu----GGCCGGC-CCGGCgcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 42375 0.66 0.310063
Target:  5'- gAGGUGAACUGGCa-GGCCGgacagacCGUCaCCc -3'
miRNA:   3'- -UCCGCUUGGCCGgcCCGGC-------GCAGcGG- -5'
24099 3' -64.8 NC_005262.1 + 42980 0.75 0.074376
Target:  5'- uGGCuGAaaACCGcGCCGGGCCGCuUCGUg -3'
miRNA:   3'- uCCG-CU--UGGC-CGGCCCGGCGcAGCGg -5'
24099 3' -64.8 NC_005262.1 + 43053 0.69 0.192976
Target:  5'- --uCGAcCCGGCCGGcaCCGCG-CGCCg -3'
miRNA:   3'- uccGCUuGGCCGGCCc-GGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 43214 0.72 0.122355
Target:  5'- cGGCGcGCCGcgcgcugcucGCCGGGCUGC-UCGUCu -3'
miRNA:   3'- uCCGCuUGGC----------CGGCCCGGCGcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 43670 0.68 0.252021
Target:  5'- uGGCGAccugaacgcaaGCCaaGCCGGGCCGaauUCGCg -3'
miRNA:   3'- uCCGCU-----------UGGc-CGGCCCGGCgc-AGCGg -5'
24099 3' -64.8 NC_005262.1 + 43835 0.77 0.055467
Target:  5'- -cGCGGGCCGGCCGcGcGCgGCGgugCGCCg -3'
miRNA:   3'- ucCGCUUGGCCGGC-C-CGgCGCa--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 44131 0.66 0.347669
Target:  5'- cGGCGuucccgcguuCCGGCCGGaCgCGCG-CGCg -3'
miRNA:   3'- uCCGCuu--------GGCCGGCCcG-GCGCaGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.