miRNA display CGI


Results 121 - 140 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 45411 0.66 0.317905
Target:  5'- cAGGC-AGCCgcgcaaaacucGGCCGGGCUuauggGCGggcucggaaccaUCGCCg -3'
miRNA:   3'- -UCCGcUUGG-----------CCGGCCCGG-----CGC------------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 46412 0.66 0.34308
Target:  5'- cGGGCuGGGCCcgcaagguccgcaggGGCCc-GCCGCGcCGCCc -3'
miRNA:   3'- -UCCG-CUUGG---------------CCGGccCGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 46541 0.67 0.264235
Target:  5'- cAGcGCGGcGCCGGCCGccgcucCCGCGaCGCCc -3'
miRNA:   3'- -UC-CGCU-UGGCCGGCcc----GGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 46697 0.67 0.289428
Target:  5'- cGGUGGACCuccucgcGGCCc-GCCGCGUCGaCg -3'
miRNA:   3'- uCCGCUUGG-------CCGGccCGGCGCAGCgG- -5'
24099 3' -64.8 NC_005262.1 + 46799 0.68 0.228437
Target:  5'- cGGCGAGCCGaugaCCGacgugcaGGcCCGCGcgcUCGCCg -3'
miRNA:   3'- uCCGCUUGGCc---GGC-------CC-GGCGC---AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 46918 0.71 0.154036
Target:  5'- uGGuGCGGcCCGGCgCGcGGCCGgG-CGCCu -3'
miRNA:   3'- -UC-CGCUuGGCCG-GC-CCGGCgCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 47404 0.75 0.080525
Target:  5'- cGGCG-GCCGGCCGGGgCGgGUucaaaacugguUGCCg -3'
miRNA:   3'- uCCGCuUGGCCGGCCCgGCgCA-----------GCGG- -5'
24099 3' -64.8 NC_005262.1 + 47692 0.79 0.040051
Target:  5'- cGGCGGucugacgccaagcACCGcGCCGGGCgGCGgcUCGCCg -3'
miRNA:   3'- uCCGCU-------------UGGC-CGGCCCGgCGC--AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 48475 0.66 0.332543
Target:  5'- -cGCGAGCCgcgugGGCaCGGGCgGCGcgacggcaGCCg -3'
miRNA:   3'- ucCGCUUGG-----CCG-GCCCGgCGCag------CGG- -5'
24099 3' -64.8 NC_005262.1 + 48685 0.66 0.317905
Target:  5'- cAGcGCGuuCCaGCCGGacGCCGCGcCGCa -3'
miRNA:   3'- -UC-CGCuuGGcCGGCC--CGGCGCaGCGg -5'
24099 3' -64.8 NC_005262.1 + 49193 0.66 0.317186
Target:  5'- cGGCGAugaucuccggcauGCUGGCCgaGGGCgGCcUCGgCg -3'
miRNA:   3'- uCCGCU-------------UGGCCGG--CCCGgCGcAGCgG- -5'
24099 3' -64.8 NC_005262.1 + 49725 0.72 0.119234
Target:  5'- cGGCGAACCGGCgGccgaaGCCGCaccgaCGCCg -3'
miRNA:   3'- uCCGCUUGGCCGgCc----CGGCGca---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 49774 0.7 0.188256
Target:  5'- gAGGCu--CCGGCCGcuGCCGCGccggaCGCCc -3'
miRNA:   3'- -UCCGcuuGGCCGGCc-CGGCGCa----GCGG- -5'
24099 3' -64.8 NC_005262.1 + 49935 0.67 0.264235
Target:  5'- cAGaCGAcgaCGGCCGGuGCUGCGccaucgagUCGCCg -3'
miRNA:   3'- -UCcGCUug-GCCGGCC-CGGCGC--------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 50272 0.68 0.227886
Target:  5'- aGGGCGcgcccgcGCCGGCCGagcccgugacGGCCGCGcggauugaggaGCCg -3'
miRNA:   3'- -UCCGCu------UGGCCGGC----------CCGGCGCag---------CGG- -5'
24099 3' -64.8 NC_005262.1 + 50407 0.67 0.264235
Target:  5'- cGGCGAucagcGCCGcggaGCgcgaGGGCCGCGUgcaCGUCg -3'
miRNA:   3'- uCCGCU-----UGGC----CGg---CCCGGCGCA---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 50839 0.66 0.339289
Target:  5'- cGcCGAGCCGGUCGGcgaugccGUCGCGcaCGCCc -3'
miRNA:   3'- uCcGCUUGGCCGGCC-------CGGCGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 51110 0.66 0.312898
Target:  5'- aAGGCGAucgugcucgacgcGCCGGUCGacaaggcgcucgacGCCGUgaagaaGUCGCCg -3'
miRNA:   3'- -UCCGCU-------------UGGCCGGCc-------------CGGCG------CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 51124 0.68 0.234575
Target:  5'- cGGCaGAACgGGCgcaGGguucGCCGCG-CGCCg -3'
miRNA:   3'- uCCG-CUUGgCCGg--CC----CGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 51195 0.66 0.339289
Target:  5'- cGGCG-GCCcGCUGGaGCCGCGcgggcgaugcugaUCGCa -3'
miRNA:   3'- uCCGCuUGGcCGGCC-CGGCGC-------------AGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.