miRNA display CGI


Results 61 - 80 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 41651 0.68 0.258069
Target:  5'- cGGCGAugCGGgCa-GCCGCGgcgGCCa -3'
miRNA:   3'- uCCGCUugGCCgGccCGGCGCag-CGG- -5'
24099 3' -64.8 NC_005262.1 + 41559 0.72 0.119234
Target:  5'- cAGGCcGGCCGGCgUGGGCgGCG-CgGCCg -3'
miRNA:   3'- -UCCGcUUGGCCG-GCCCGgCGCaG-CGG- -5'
24099 3' -64.8 NC_005262.1 + 40565 0.67 0.296867
Target:  5'- cGGGCaacACCGG-CGGuGCCGCGaccgUCGCg -3'
miRNA:   3'- -UCCGcu-UGGCCgGCC-CGGCGC----AGCGg -5'
24099 3' -64.8 NC_005262.1 + 40318 0.71 0.151711
Target:  5'- cGGGCGAACCucGCCcagccauucguccaGGCCGCGcaugCGCCa -3'
miRNA:   3'- -UCCGCUUGGc-CGGc-------------CCGGCGCa---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 39943 0.76 0.060104
Target:  5'- cGGGCGGcACCGGCaaGGGCgGCGU-GCCg -3'
miRNA:   3'- -UCCGCU-UGGCCGg-CCCGgCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 39583 0.68 0.252021
Target:  5'- cGGCGuGCCGGCgCaGcGUCGCGgcugcCGCCu -3'
miRNA:   3'- uCCGCuUGGCCG-GcC-CGGCGCa----GCGG- -5'
24099 3' -64.8 NC_005262.1 + 38961 0.7 0.188256
Target:  5'- aGGGUGAucgGCaCGGCgCcGGCCGCGaUCGCg -3'
miRNA:   3'- -UCCGCU---UG-GCCG-GcCCGGCGC-AGCGg -5'
24099 3' -64.8 NC_005262.1 + 38894 0.69 0.212904
Target:  5'- cGGCGuccuCCGGCU-GGCCGagcUCGCCu -3'
miRNA:   3'- uCCGCuu--GGCCGGcCCGGCgc-AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 38412 0.68 0.227336
Target:  5'- uGGCGAcaccauccagGCCGGCgCGGucgagaucacGCCGgacgacggcacgcuCGUCGCCg -3'
miRNA:   3'- uCCGCU----------UGGCCG-GCC----------CGGC--------------GCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 38045 0.66 0.340045
Target:  5'- -cGCGGGCCGugagcggcuuGCCGGcCUGCGcgaUCGCCu -3'
miRNA:   3'- ucCGCUUGGC----------CGGCCcGGCGC---AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 36873 0.72 0.135612
Target:  5'- cGGCGAAuCCGGCuCGGGau-CGUCGCg -3'
miRNA:   3'- uCCGCUU-GGCCG-GCCCggcGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 35917 0.7 0.17912
Target:  5'- aGGGCGGucUUGGCUcGGCCGCcUUGCCg -3'
miRNA:   3'- -UCCGCUu-GGCCGGcCCGGCGcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 35829 0.7 0.17912
Target:  5'- uGGGcCGGAgCGGCguCGGcGCCGCGacCGCCc -3'
miRNA:   3'- -UCC-GCUUgGCCG--GCC-CGGCGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 35518 0.67 0.266109
Target:  5'- uGGGUGGGCCacguggcagggcuucGGCCaaGCCGCGaugucgcUCGCCg -3'
miRNA:   3'- -UCCGCUUGG---------------CCGGccCGGCGC-------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 35363 0.67 0.283452
Target:  5'- cGGCGAGCaCGGCgCGGcCCGauUCGaCCu -3'
miRNA:   3'- uCCGCUUG-GCCG-GCCcGGCgcAGC-GG- -5'
24099 3' -64.8 NC_005262.1 + 35165 0.69 0.202727
Target:  5'- cGGGCGAcGCUGGCggcaaugaGGucacgaccGCCGCGUgGCCa -3'
miRNA:   3'- -UCCGCU-UGGCCGg-------CC--------CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 34866 0.67 0.273069
Target:  5'- uGGCGAcgcugcccuguuccuGCCGuGCCuGGaUCGCGaCGCCg -3'
miRNA:   3'- uCCGCU---------------UGGC-CGGcCC-GGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 34783 0.67 0.270521
Target:  5'- cGGCGGAUCGGUgaaGGuGUgGCuUCGCCu -3'
miRNA:   3'- uCCGCUUGGCCGg--CC-CGgCGcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 34626 0.7 0.162022
Target:  5'- cGGCGA--CGGCCGccugacgcauGGUCGCG-CGCCa -3'
miRNA:   3'- uCCGCUugGCCGGC----------CCGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 34123 0.69 0.212904
Target:  5'- -cGCGggUUGGgCGGGCUGCGcgggCGCg -3'
miRNA:   3'- ucCGCuuGGCCgGCCCGGCGCa---GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.