miRNA display CGI


Results 101 - 120 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 23409 0.76 0.066874
Target:  5'- cGGCGAugCGGCgGGcagcaugaGCCGCGUCaucgaGCCg -3'
miRNA:   3'- uCCGCUugGCCGgCC--------CGGCGCAG-----CGG- -5'
24099 3' -64.8 NC_005262.1 + 22310 0.66 0.301677
Target:  5'- cGGUGAcggugugauugugcGCCGGCaucuGGGCUGCGgucagCGUa -3'
miRNA:   3'- uCCGCU--------------UGGCCGg---CCCGGCGCa----GCGg -5'
24099 3' -64.8 NC_005262.1 + 22233 0.66 0.317905
Target:  5'- cGGCcGcgccgcccacGCCGGCCGGcCUGCGcaucacgccgUCGCCa -3'
miRNA:   3'- uCCGcU----------UGGCCGGCCcGGCGC----------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 21646 0.67 0.264235
Target:  5'- cGGCcgcGACCGGgcCCGGcGCCGCGUaGaCCg -3'
miRNA:   3'- uCCGc--UUGGCC--GGCC-CGGCGCAgC-GG- -5'
24099 3' -64.8 NC_005262.1 + 21510 0.66 0.317905
Target:  5'- -cGCGAgaacacgucGCCGGugcCCGuGCCGCucGUCGCCg -3'
miRNA:   3'- ucCGCU---------UGGCC---GGCcCGGCG--CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 21379 0.68 0.252021
Target:  5'- -uGCG-GCCGGCUGGcGCCGCcugaaaGCCg -3'
miRNA:   3'- ucCGCuUGGCCGGCC-CGGCGcag---CGG- -5'
24099 3' -64.8 NC_005262.1 + 21343 0.72 0.132179
Target:  5'- gAGGCGAucgaGgCGGCCaaGGCCGCG-CGCa -3'
miRNA:   3'- -UCCGCU----UgGCCGGc-CCGGCGCaGCGg -5'
24099 3' -64.8 NC_005262.1 + 21004 0.67 0.276926
Target:  5'- cGGGCGAcgcGCCGGagaCGauguagggcuGGCCGUccGUCGCg -3'
miRNA:   3'- -UCCGCU---UGGCCg--GC----------CCGGCG--CAGCGg -5'
24099 3' -64.8 NC_005262.1 + 20743 0.71 0.146409
Target:  5'- cGGCGcgcgguGCCGGCCGGGUCGaUGUacucguaGCUg -3'
miRNA:   3'- uCCGCu-----UGGCCGGCCCGGC-GCAg------CGG- -5'
24099 3' -64.8 NC_005262.1 + 19969 0.81 0.024642
Target:  5'- -cGCGcGGCCGGcCCGcGGCCGUGUCGCCg -3'
miRNA:   3'- ucCGC-UUGGCC-GGC-CCGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 19662 0.67 0.276926
Target:  5'- -cGCGu-CCGGCCGGaaCGCGggaaCGCCg -3'
miRNA:   3'- ucCGCuuGGCCGGCCcgGCGCa---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 19106 0.76 0.068496
Target:  5'- cGGCGAugCcacguucggaucgGGCgCGGG-CGCGUCGCCg -3'
miRNA:   3'- uCCGCUugG-------------CCG-GCCCgGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 17913 0.67 0.276926
Target:  5'- cGGCGAGCCGccgaUCGGcGCCGa--CGCCa -3'
miRNA:   3'- uCCGCUUGGCc---GGCC-CGGCgcaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 17687 0.76 0.066874
Target:  5'- cGGCGAagaaGCCGGCCGuGGUCGC-UgGCCc -3'
miRNA:   3'- uCCGCU----UGGCCGGC-CCGGCGcAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 17260 0.73 0.114394
Target:  5'- cGGCGGccggcGCCGcGCUGGGCUgcugcgcgggcagggGCGUCGCg -3'
miRNA:   3'- uCCGCU-----UGGC-CGGCCCGG---------------CGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 17062 0.67 0.290099
Target:  5'- cGGCGAucgauCCGGUCGuGCCGgauugCGCCg -3'
miRNA:   3'- uCCGCUu----GGCCGGCcCGGCgca--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 16973 0.66 0.320793
Target:  5'- cGGGCaccGAuauugcccugcugccGCCGGCCGaGCgCGCGcUCGUCg -3'
miRNA:   3'- -UCCG---CU---------------UGGCCGGCcCG-GCGC-AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 16872 0.7 0.17912
Target:  5'- cAGGCGcccGGCCGcgcGCCGGGCCGCaccacacCGCa -3'
miRNA:   3'- -UCCGC---UUGGC---CGGCCCGGCGca-----GCGg -5'
24099 3' -64.8 NC_005262.1 + 16585 0.68 0.258069
Target:  5'- cAGGCGcguguGCUGGUCGaGGCgGCGaagcaGCCg -3'
miRNA:   3'- -UCCGCu----UGGCCGGC-CCGgCGCag---CGG- -5'
24099 3' -64.8 NC_005262.1 + 16086 0.67 0.282794
Target:  5'- cGGCGAGCCgccgcccGGCgCGGuGCUugGCGUcagacCGCCg -3'
miRNA:   3'- uCCGCUUGG-------CCG-GCC-CGG--CGCA-----GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.