Results 41 - 60 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 17687 | 0.76 | 0.066874 |
Target: 5'- cGGCGAagaaGCCGGCCGuGGUCGC-UgGCCc -3' miRNA: 3'- uCCGCU----UGGCCGGC-CCGGCGcAgCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 11483 | 0.76 | 0.061732 |
Target: 5'- -cGCGAGCaca-UGGGCCGCGUCGCCg -3' miRNA: 3'- ucCGCUUGgccgGCCCGGCGCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 60492 | 0.76 | 0.061732 |
Target: 5'- aGGGCGAGac-GCCGGGCCGCGcggCGCa -3' miRNA: 3'- -UCCGCUUggcCGGCCCGGCGCa--GCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 43835 | 0.77 | 0.055467 |
Target: 5'- -cGCGGGCCGGCCGcGcGCgGCGgugCGCCg -3' miRNA: 3'- ucCGCUUGGCCGGC-C-CGgCGCa--GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 47692 | 0.79 | 0.040051 |
Target: 5'- cGGCGGucugacgccaagcACCGcGCCGGGCgGCGgcUCGCCg -3' miRNA: 3'- uCCGCU-------------UGGC-CGGCCCGgCGC--AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 61169 | 0.72 | 0.119234 |
Target: 5'- cGGGCGAGCUGa-CGGGCgCGCGgCGCUa -3' miRNA: 3'- -UCCGCUUGGCcgGCCCG-GCGCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 63657 | 0.72 | 0.128826 |
Target: 5'- cGGGCGAACUGGCUGGaauuGCCgGCGaCGgCg -3' miRNA: 3'- -UCCGCUUGGCCGGCC----CGG-CGCaGCgG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 35165 | 0.69 | 0.202727 |
Target: 5'- cGGGCGAcGCUGGCggcaaugaGGucacgaccGCCGCGUgGCCa -3' miRNA: 3'- -UCCGCU-UGGCCGg-------CC--------CGGCGCAgCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 24816 | 0.69 | 0.201733 |
Target: 5'- aAGcGCGAGCucgcgaucgCGGCCGGcGCCGUGccgaucacccugCGCCa -3' miRNA: 3'- -UC-CGCUUG---------GCCGGCC-CGGCGCa-----------GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 14318 | 0.69 | 0.197799 |
Target: 5'- cGGCGGaaccGCCGaGCUGGGCgGCGaagUUGCg -3' miRNA: 3'- uCCGCU----UGGC-CGGCCCGgCGC---AGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 5171 | 0.69 | 0.197799 |
Target: 5'- cGGUGA--CGGCCGGcGUCGCGggCGCg -3' miRNA: 3'- uCCGCUugGCCGGCC-CGGCGCa-GCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 43053 | 0.69 | 0.192976 |
Target: 5'- --uCGAcCCGGCCGGcaCCGCG-CGCCg -3' miRNA: 3'- uccGCUuGGCCGGCCc-GGCGCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 4329 | 0.69 | 0.192976 |
Target: 5'- cGGCGAGCCucgCGGGCCGUccaucggccGUCGCg -3' miRNA: 3'- uCCGCUUGGccgGCCCGGCG---------CAGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 49774 | 0.7 | 0.188256 |
Target: 5'- gAGGCu--CCGGCCGcuGCCGCGccggaCGCCc -3' miRNA: 3'- -UCCGcuuGGCCGGCc-CGGCGCa----GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 63307 | 0.7 | 0.183638 |
Target: 5'- cGGCGucGACgUGGaacaCGcGcGCCGCGUCGCCg -3' miRNA: 3'- uCCGC--UUG-GCCg---GC-C-CGGCGCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 16872 | 0.7 | 0.17912 |
Target: 5'- cAGGCGcccGGCCGcgcGCCGGGCCGCaccacacCGCa -3' miRNA: 3'- -UCCGC---UUGGC---CGGCCCGGCGca-----GCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 35829 | 0.7 | 0.17912 |
Target: 5'- uGGGcCGGAgCGGCguCGGcGCCGCGacCGCCc -3' miRNA: 3'- -UCC-GCUUgGCCG--GCC-CGGCGCa-GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 52700 | 0.71 | 0.146409 |
Target: 5'- aAGGCc-GCCGGCCGacgccggacgaGGCCGCGcUGCUg -3' miRNA: 3'- -UCCGcuUGGCCGGC-----------CCGGCGCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 34005 | 0.72 | 0.135612 |
Target: 5'- gGGcGCGGACgGcgugacGCCGGGCCGCaucGUgCGCCg -3' miRNA: 3'- -UC-CGCUUGgC------CGGCCCGGCG---CA-GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 21343 | 0.72 | 0.132179 |
Target: 5'- gAGGCGAucgaGgCGGCCaaGGCCGCG-CGCa -3' miRNA: 3'- -UCCGCU----UgGCCGGc-CCGGCGCaGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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