miRNA display CGI


Results 81 - 100 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 5171 0.69 0.197799
Target:  5'- cGGUGA--CGGCCGGcGUCGCGggCGCg -3'
miRNA:   3'- uCCGCUugGCCGGCC-CGGCGCa-GCGg -5'
24099 3' -64.8 NC_005262.1 + 14318 0.69 0.197799
Target:  5'- cGGCGGaaccGCCGaGCUGGGCgGCGaagUUGCg -3'
miRNA:   3'- uCCGCU----UGGC-CGGCCCGgCGC---AGCGg -5'
24099 3' -64.8 NC_005262.1 + 24816 0.69 0.201733
Target:  5'- aAGcGCGAGCucgcgaucgCGGCCGGcGCCGUGccgaucacccugCGCCa -3'
miRNA:   3'- -UC-CGCUUG---------GCCGGCC-CGGCGCa-----------GCGG- -5'
24099 3' -64.8 NC_005262.1 + 35165 0.69 0.202727
Target:  5'- cGGGCGAcGCUGGCggcaaugaGGucacgaccGCCGCGUgGCCa -3'
miRNA:   3'- -UCCGCU-UGGCCGg-------CC--------CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 5081 0.69 0.202727
Target:  5'- cGGCGcgugcGACCGGCUcGGCgGUGcgCGCCc -3'
miRNA:   3'- uCCGC-----UUGGCCGGcCCGgCGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 56767 0.69 0.204226
Target:  5'- cGGGCGAcgagcgcuacaugaaGCUGGCCGgccugaaGGCCGaCGUCGa- -3'
miRNA:   3'- -UCCGCU---------------UGGCCGGC-------CCGGC-GCAGCgg -5'
24099 3' -64.8 NC_005262.1 + 9127 0.69 0.212904
Target:  5'- cGGCuaugaGGACCGgcGCCGGGCCG-GUCGg- -3'
miRNA:   3'- uCCG-----CUUGGC--CGGCCCGGCgCAGCgg -5'
24099 3' -64.8 NC_005262.1 + 29646 0.66 0.322973
Target:  5'- cGGCGAcgGCCGG-CGGGUagacguagaagaugCGCGgugCGCg -3'
miRNA:   3'- uCCGCU--UGGCCgGCCCG--------------GCGCa--GCGg -5'
24099 3' -64.8 NC_005262.1 + 21510 0.66 0.317905
Target:  5'- -cGCGAgaacacgucGCCGGugcCCGuGCCGCucGUCGCCg -3'
miRNA:   3'- ucCGCU---------UGGCC---GGCcCGGCG--CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 8949 0.66 0.317905
Target:  5'- uGaCGAGCCGGUCGGcgcGCUGCGU-GUCg -3'
miRNA:   3'- uCcGCUUGGCCGGCC---CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 3590 0.66 0.31077
Target:  5'- uGcCGAccucGCCGGCCGGcuccuuGCCG-GUUGCCg -3'
miRNA:   3'- uCcGCU----UGGCCGGCC------CGGCgCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 9179 0.66 0.31077
Target:  5'- cGGCGGACCacgaGCCGaGCCGCGagUUGUa -3'
miRNA:   3'- uCCGCUUGGc---CGGCcCGGCGC--AGCGg -5'
24099 3' -64.8 NC_005262.1 + 13225 0.66 0.323701
Target:  5'- cGGC-AGCgGGCuCGGGCUGCGguugaacgggugCGCg -3'
miRNA:   3'- uCCGcUUGgCCG-GCCCGGCGCa-----------GCGg -5'
24099 3' -64.8 NC_005262.1 + 32583 0.66 0.324431
Target:  5'- cAGGCGcgcgaucuugccuGACUuGUCGGcgagcgugaucGUCGCGUCGCCg -3'
miRNA:   3'- -UCCGC-------------UUGGcCGGCC-----------CGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 10639 0.66 0.325162
Target:  5'- aGGGCGggUU-GCCGaucGCCGCGUCGa- -3'
miRNA:   3'- -UCCGCuuGGcCGGCc--CGGCGCAGCgg -5'
24099 3' -64.8 NC_005262.1 + 50839 0.66 0.339289
Target:  5'- cGcCGAGCCGGUCGGcgaugccGUCGCGcaCGCCc -3'
miRNA:   3'- uCcGCUUGGCCGGCC-------CGGCGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 60820 0.66 0.340045
Target:  5'- gAGGcCGAuuGCCcgauGCCGGGCaGCGUgagUGCCc -3'
miRNA:   3'- -UCC-GCU--UGGc---CGGCCCGgCGCA---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 38045 0.66 0.340045
Target:  5'- -cGCGGGCCGugagcggcuuGCCGGcCUGCGcgaUCGCCu -3'
miRNA:   3'- ucCGCUUGGC----------CGGCCcGGCGC---AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 2543 0.66 0.347669
Target:  5'- --aCGAACUGGCCcaGGCCGCcgguguagGUgCGCCa -3'
miRNA:   3'- uccGCUUGGCCGGc-CCGGCG--------CA-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 19969 0.81 0.024642
Target:  5'- -cGCGcGGCCGGcCCGcGGCCGUGUCGCCg -3'
miRNA:   3'- ucCGC-UUGGCC-GGC-CCGGCGCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.