miRNA display CGI


Results 21 - 40 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 46697 0.67 0.289428
Target:  5'- cGGUGGACCuccucgcGGCCc-GCCGCGUCGaCg -3'
miRNA:   3'- uCCGCUUGG-------CCGGccCGGCGCAGCgG- -5'
24099 3' -64.8 NC_005262.1 + 52024 0.67 0.290099
Target:  5'- aGGaGCGcGCCcaGGUCGGGCCGC---GCCa -3'
miRNA:   3'- -UC-CGCuUGG--CCGGCCCGGCGcagCGG- -5'
24099 3' -64.8 NC_005262.1 + 8949 0.66 0.317905
Target:  5'- uGaCGAGCCGGUCGGcgcGCUGCGU-GUCg -3'
miRNA:   3'- uCcGCUUGGCCGGCC---CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 60820 0.66 0.340045
Target:  5'- gAGGcCGAuuGCCcgauGCCGGGCaGCGUgagUGCCc -3'
miRNA:   3'- -UCC-GCU--UGGc---CGGCCCGgCGCA---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 3989 0.67 0.264235
Target:  5'- uGGCGccuGCgGGCCGGuGCCcucgaggaacGCGUUGaCCu -3'
miRNA:   3'- uCCGCu--UGgCCGGCC-CGG----------CGCAGC-GG- -5'
24099 3' -64.8 NC_005262.1 + 21004 0.67 0.276926
Target:  5'- cGGGCGAcgcGCCGGagaCGauguagggcuGGCCGUccGUCGCg -3'
miRNA:   3'- -UCCGCU---UGGCCg--GC----------CCGGCG--CAGCGg -5'
24099 3' -64.8 NC_005262.1 + 54648 0.67 0.296867
Target:  5'- cGGGUGAuccgcauuccgACCGGcCCGGcGCCG-GUCcucauaGCCg -3'
miRNA:   3'- -UCCGCU-----------UGGCC-GGCC-CGGCgCAG------CGG- -5'
24099 3' -64.8 NC_005262.1 + 38045 0.66 0.340045
Target:  5'- -cGCGGGCCGugagcggcuuGCCGGcCUGCGcgaUCGCCu -3'
miRNA:   3'- ucCGCUUGGC----------CGGCCcGGCGC---AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 19662 0.67 0.276926
Target:  5'- -cGCGu-CCGGCCGGaaCGCGggaaCGCCg -3'
miRNA:   3'- ucCGCuuGGCCGGCCcgGCGCa---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 2543 0.66 0.347669
Target:  5'- --aCGAACUGGCCcaGGCCGCcgguguagGUgCGCCa -3'
miRNA:   3'- uccGCUUGGCCGGc-CCGGCG--------CA-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 58763 0.67 0.290099
Target:  5'- cAGGC--GCCGGCCGGcgagcaacuGCCGCuGgaggcaGCCg -3'
miRNA:   3'- -UCCGcuUGGCCGGCC---------CGGCG-Cag----CGG- -5'
24099 3' -64.8 NC_005262.1 + 52386 0.67 0.283452
Target:  5'- cGGCGGcCCGGCgCGGcGCgGCuUCGgCg -3'
miRNA:   3'- uCCGCUuGGCCG-GCC-CGgCGcAGCgG- -5'
24099 3' -64.8 NC_005262.1 + 55781 0.66 0.303757
Target:  5'- -cGCGAGCCGGa-GGGCCuuUGcCGCCu -3'
miRNA:   3'- ucCGCUUGGCCggCCCGGc-GCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 3590 0.66 0.31077
Target:  5'- uGcCGAccucGCCGGCCGGcuccuuGCCG-GUUGCCg -3'
miRNA:   3'- uCcGCU----UGGCCGGCC------CGGCgCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 13225 0.66 0.323701
Target:  5'- cGGC-AGCgGGCuCGGGCUGCGguugaacgggugCGCg -3'
miRNA:   3'- uCCGcUUGgCCG-GCCCGGCGCa-----------GCGg -5'
24099 3' -64.8 NC_005262.1 + 50839 0.66 0.339289
Target:  5'- cGcCGAGCCGGUCGGcgaugccGUCGCGcaCGCCc -3'
miRNA:   3'- uCcGCUUGGCCGGCC-------CGGCGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 4875 0.68 0.252021
Target:  5'- aAGcGCGcgccAUCGGUCGGGCCGCcg-GCCu -3'
miRNA:   3'- -UC-CGCu---UGGCCGGCCCGGCGcagCGG- -5'
24099 3' -64.8 NC_005262.1 + 41651 0.68 0.258069
Target:  5'- cGGCGAugCGGgCa-GCCGCGgcgGCCa -3'
miRNA:   3'- uCCGCUugGCCgGccCGGCGCag-CGG- -5'
24099 3' -64.8 NC_005262.1 + 13769 0.67 0.270521
Target:  5'- cGGC--GCCGGCuCGGGCUucacuucgGUGggCGCCg -3'
miRNA:   3'- uCCGcuUGGCCG-GCCCGG--------CGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 34866 0.67 0.273069
Target:  5'- uGGCGAcgcugcccuguuccuGCCGuGCCuGGaUCGCGaCGCCg -3'
miRNA:   3'- uCCGCU---------------UGGC-CGGcCC-GGCGCaGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.