miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 21646 0.67 0.264235
Target:  5'- cGGCcgcGACCGGgcCCGGcGCCGCGUaGaCCg -3'
miRNA:   3'- uCCGc--UUGGCC--GGCC-CGGCGCAgC-GG- -5'
24099 3' -64.8 NC_005262.1 + 54648 0.67 0.296867
Target:  5'- cGGGUGAuccgcauuccgACCGGcCCGGcGCCG-GUCcucauaGCCg -3'
miRNA:   3'- -UCCGCU-----------UGGCC-GGCC-CGGCgCAG------CGG- -5'
24099 3' -64.8 NC_005262.1 + 38045 0.66 0.340045
Target:  5'- -cGCGGGCCGugagcggcuuGCCGGcCUGCGcgaUCGCCu -3'
miRNA:   3'- ucCGCUUGGC----------CGGCCcGGCGC---AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 49935 0.67 0.264235
Target:  5'- cAGaCGAcgaCGGCCGGuGCUGCGccaucgagUCGCCg -3'
miRNA:   3'- -UCcGCUug-GCCGGCC-CGGCGC--------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 2543 0.66 0.347669
Target:  5'- --aCGAACUGGCCcaGGCCGCcgguguagGUgCGCCa -3'
miRNA:   3'- uccGCUUGGCCGGc-CCGGCG--------CA-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 23459 0.69 0.201733
Target:  5'- -aGCGcGCCGGCCGuGaGCCGaugcucgaagcgGUCGCCg -3'
miRNA:   3'- ucCGCuUGGCCGGC-C-CGGCg-----------CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 50839 0.66 0.339289
Target:  5'- cGcCGAGCCGGUCGGcgaugccGUCGCGcaCGCCc -3'
miRNA:   3'- uCcGCUUGGCCGGCC-------CGGCGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 909 0.69 0.212904
Target:  5'- cGGCGcGCUGG-CGGGUgaugGUGUCGCCc -3'
miRNA:   3'- uCCGCuUGGCCgGCCCGg---CGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 38894 0.69 0.212904
Target:  5'- cGGCGuccuCCGGCU-GGCCGagcUCGCCu -3'
miRNA:   3'- uCCGCuu--GGCCGGcCCGGCgc-AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 51124 0.68 0.234575
Target:  5'- cGGCaGAACgGGCgcaGGguucGCCGCG-CGCCg -3'
miRNA:   3'- uCCG-CUUGgCCGg--CC----CGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 27479 0.68 0.245503
Target:  5'- cGGCGAgcgcACCGGCCccccaccgaagucGaccgaGGUguuCGCGUCGCCg -3'
miRNA:   3'- uCCGCU----UGGCCGG-------------C-----CCG---GCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 4875 0.68 0.252021
Target:  5'- aAGcGCGcgccAUCGGUCGGGCCGCcg-GCCu -3'
miRNA:   3'- -UC-CGCu---UGGCCGGCCCGGCGcagCGG- -5'
24099 3' -64.8 NC_005262.1 + 41651 0.68 0.258069
Target:  5'- cGGCGAugCGGgCa-GCCGCGgcgGCCa -3'
miRNA:   3'- uCCGCUugGCCgGccCGGCGCag-CGG- -5'
24099 3' -64.8 NC_005262.1 + 15113 0.67 0.270521
Target:  5'- cGGCGu-CCGGCUGGaaCGCGcUgGCCg -3'
miRNA:   3'- uCCGCuuGGCCGGCCcgGCGC-AgCGG- -5'
24099 3' -64.8 NC_005262.1 + 19662 0.67 0.276926
Target:  5'- -cGCGu-CCGGCCGGaaCGCGggaaCGCCg -3'
miRNA:   3'- ucCGCuuGGCCGGCCcgGCGCa---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 46697 0.67 0.289428
Target:  5'- cGGUGGACCuccucgcGGCCc-GCCGCGUCGaCg -3'
miRNA:   3'- uCCGCUUGG-------CCGGccCGGCGCAGCgG- -5'
24099 3' -64.8 NC_005262.1 + 52024 0.67 0.290099
Target:  5'- aGGaGCGcGCCcaGGUCGGGCCGC---GCCa -3'
miRNA:   3'- -UC-CGCuUGG--CCGGCCCGGCGcagCGG- -5'
24099 3' -64.8 NC_005262.1 + 55781 0.66 0.303757
Target:  5'- -cGCGAGCCGGa-GGGCCuuUGcCGCCu -3'
miRNA:   3'- ucCGCUUGGCCggCCCGGc-GCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 3590 0.66 0.31077
Target:  5'- uGcCGAccucGCCGGCCGGcuccuuGCCG-GUUGCCg -3'
miRNA:   3'- uCcGCU----UGGCCGGCC------CGGCgCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 13225 0.66 0.323701
Target:  5'- cGGC-AGCgGGCuCGGGCUGCGguugaacgggugCGCg -3'
miRNA:   3'- uCCGcUUGgCCG-GCCCGGCGCa-----------GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.