miRNA display CGI


Results 61 - 80 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 41651 0.68 0.258069
Target:  5'- cGGCGAugCGGgCa-GCCGCGgcgGCCa -3'
miRNA:   3'- uCCGCUugGCCgGccCGGCGCag-CGG- -5'
24099 3' -64.8 NC_005262.1 + 14062 0.68 0.24609
Target:  5'- cGGCGucgGugCGGCUucGGCCGCcgguUCGCCg -3'
miRNA:   3'- uCCGC---UugGCCGGc-CCGGCGc---AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 10639 0.66 0.325162
Target:  5'- aGGGCGggUU-GCCGaucGCCGCGUCGa- -3'
miRNA:   3'- -UCCGCuuGGcCGGCc--CGGCGCAGCgg -5'
24099 3' -64.8 NC_005262.1 + 29646 0.66 0.322973
Target:  5'- cGGCGAcgGCCGG-CGGGUagacguagaagaugCGCGgugCGCg -3'
miRNA:   3'- uCCGCU--UGGCCgGCCCG--------------GCGCa--GCGg -5'
24099 3' -64.8 NC_005262.1 + 9179 0.66 0.31077
Target:  5'- cGGCGGACCacgaGCCGaGCCGCGagUUGUa -3'
miRNA:   3'- uCCGCUUGGc---CGGCcCGGCGC--AGCGg -5'
24099 3' -64.8 NC_005262.1 + 9781 0.66 0.303757
Target:  5'- uAGGCGAGCaGGUU--GCCGUGcuUCGCCg -3'
miRNA:   3'- -UCCGCUUGgCCGGccCGGCGC--AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 17062 0.67 0.290099
Target:  5'- cGGCGAucgauCCGGUCGuGCCGgauugCGCCg -3'
miRNA:   3'- uCCGCUu----GGCCGGCcCGGCgca--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 52386 0.67 0.283452
Target:  5'- cGGCGGcCCGGCgCGGcGCgGCuUCGgCg -3'
miRNA:   3'- uCCGCUuGGCCG-GCC-CGgCGcAGCgG- -5'
24099 3' -64.8 NC_005262.1 + 21004 0.67 0.276926
Target:  5'- cGGGCGAcgcGCCGGagaCGauguagggcuGGCCGUccGUCGCg -3'
miRNA:   3'- -UCCGCU---UGGCCg--GC----------CCGGCG--CAGCGg -5'
24099 3' -64.8 NC_005262.1 + 11634 0.67 0.270521
Target:  5'- cGGCGucgaGGCCGGGguaguugCGCGcCGCCu -3'
miRNA:   3'- uCCGCuuggCCGGCCCg------GCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 4837 0.74 0.084668
Target:  5'- cGGCG-GCCGGCUGGuucgacuGCUGCG-CGCCg -3'
miRNA:   3'- uCCGCuUGGCCGGCC-------CGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 17260 0.73 0.114394
Target:  5'- cGGCGGccggcGCCGcGCUGGGCUgcugcgcgggcagggGCGUCGCg -3'
miRNA:   3'- uCCGCU-----UGGC-CGGCCCGG---------------CGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 13399 0.68 0.234575
Target:  5'- cGGCGcuGAUCGccGCgCGGuuCGCGUCGCCa -3'
miRNA:   3'- uCCGC--UUGGC--CG-GCCcgGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 54826 0.68 0.223516
Target:  5'- gGGGUuGGCUGGCUccggauGGGUggagUGCGUCGCCc -3'
miRNA:   3'- -UCCGcUUGGCCGG------CCCG----GCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 909 0.69 0.212904
Target:  5'- cGGCGcGCUGG-CGGGUgaugGUGUCGCCc -3'
miRNA:   3'- uCCGCuUGGCCgGCCCGg---CGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 23459 0.69 0.201733
Target:  5'- -aGCGcGCCGGCCGuGaGCCGaugcucgaagcgGUCGCCg -3'
miRNA:   3'- ucCGCuUGGCCGGC-C-CGGCg-----------CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 32700 0.7 0.17912
Target:  5'- gAGGUaGGAUU-GUCGGGCCGCGgcUCGCCc -3'
miRNA:   3'- -UCCG-CUUGGcCGGCCCGGCGC--AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 34626 0.7 0.162022
Target:  5'- cGGCGA--CGGCCGccugacgcauGGUCGCG-CGCCa -3'
miRNA:   3'- uCCGCUugGCCGGC----------CCGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 20743 0.71 0.146409
Target:  5'- cGGCGcgcgguGCCGGCCGGGUCGaUGUacucguaGCUg -3'
miRNA:   3'- uCCGCu-----UGGCCGGCCCGGC-GCAg------CGG- -5'
24099 3' -64.8 NC_005262.1 + 36873 0.72 0.135612
Target:  5'- cGGCGAAuCCGGCuCGGGau-CGUCGCg -3'
miRNA:   3'- uCCGCUU-GGCCG-GCCCggcGCAGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.