Results 81 - 100 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 46697 | 0.67 | 0.289428 |
Target: 5'- cGGUGGACCuccucgcGGCCc-GCCGCGUCGaCg -3' miRNA: 3'- uCCGCUUGG-------CCGGccCGGCGCAGCgG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 52024 | 0.67 | 0.290099 |
Target: 5'- aGGaGCGcGCCcaGGUCGGGCCGC---GCCa -3' miRNA: 3'- -UC-CGCuUGG--CCGGCCCGGCGcagCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 46918 | 0.71 | 0.154036 |
Target: 5'- uGGuGCGGcCCGGCgCGcGGCCGgG-CGCCu -3' miRNA: 3'- -UC-CGCUuGGCCG-GC-CCGGCgCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 40318 | 0.71 | 0.151711 |
Target: 5'- cGGGCGAACCucGCCcagccauucguccaGGCCGCGcaugCGCCa -3' miRNA: 3'- -UCCGCUUGGc-CGGc-------------CCGGCGCa---GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 4795 | 0.67 | 0.276926 |
Target: 5'- cGGGaucgGAGCCGGCCGcGuaGCGcugguuUCGCCg -3' miRNA: 3'- -UCCg---CUUGGCCGGCcCggCGC------AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 17913 | 0.67 | 0.276926 |
Target: 5'- cGGCGAGCCGccgaUCGGcGCCGa--CGCCa -3' miRNA: 3'- uCCGCUUGGCc---GGCC-CGGCgcaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 11411 | 0.67 | 0.274992 |
Target: 5'- aAGcCGcGCCGcGCCGGGCCGCcgaaggugcgcgacaCGCCg -3' miRNA: 3'- -UCcGCuUGGC-CGGCCCGGCGca-------------GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 56767 | 0.69 | 0.204226 |
Target: 5'- cGGGCGAcgagcgcuacaugaaGCUGGCCGgccugaaGGCCGaCGUCGa- -3' miRNA: 3'- -UCCGCU---------------UGGCCGGC-------CCGGC-GCAGCgg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 51379 | 0.67 | 0.276926 |
Target: 5'- -cGCGAcGCCGGCCaaGGCCGCGcCuGaCCg -3' miRNA: 3'- ucCGCU-UGGCCGGc-CCGGCGCaG-C-GG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 29434 | 0.67 | 0.282794 |
Target: 5'- cAGGCGAagGCCcGCaaGGCUGCGgcagaggcgcaggUCGCCg -3' miRNA: 3'- -UCCGCU--UGGcCGgcCCGGCGC-------------AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 5081 | 0.69 | 0.202727 |
Target: 5'- cGGCGcgugcGACCGGCUcGGCgGUGcgCGCCc -3' miRNA: 3'- uCCGC-----UUGGCCGGcCCGgCGCa-GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 35165 | 0.69 | 0.202727 |
Target: 5'- cGGGCGAcGCUGGCggcaaugaGGucacgaccGCCGCGUgGCCa -3' miRNA: 3'- -UCCGCU-UGGCCGg-------CC--------CGGCGCAgCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 24816 | 0.69 | 0.201733 |
Target: 5'- aAGcGCGAGCucgcgaucgCGGCCGGcGCCGUGccgaucacccugCGCCa -3' miRNA: 3'- -UC-CGCUUG---------GCCGGCC-CGGCGCa-----------GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 51543 | 0.66 | 0.303757 |
Target: 5'- cGGCG-ACCGGCuCGcguaccacguGGUCGCG-CGCg -3' miRNA: 3'- uCCGCuUGGCCG-GC----------CCGGCGCaGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 33739 | 0.66 | 0.303757 |
Target: 5'- aAGGCGaAGCUcGCCgaaGGcGCUGCGUaaCGCCa -3' miRNA: 3'- -UCCGC-UUGGcCGG---CC-CGGCGCA--GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 40565 | 0.67 | 0.296867 |
Target: 5'- cGGGCaacACCGG-CGGuGCCGCGaccgUCGCg -3' miRNA: 3'- -UCCGcu-UGGCCgGCC-CGGCGC----AGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 4125 | 0.67 | 0.283452 |
Target: 5'- -cGCGAaaGCCGGgcauaaaaaaaCGGcGCCGCGUggCGCCg -3' miRNA: 3'- ucCGCU--UGGCCg----------GCC-CGGCGCA--GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 987 | 0.67 | 0.283452 |
Target: 5'- uGGCGAccuGCgGGgCGGGgCGguguagagcuUGUCGCCg -3' miRNA: 3'- uCCGCU---UGgCCgGCCCgGC----------GCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 61169 | 0.72 | 0.119234 |
Target: 5'- cGGGCGAGCUGa-CGGGCgCGCGgCGCUa -3' miRNA: 3'- -UCCGCUUGGCcgGCCCG-GCGCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 49725 | 0.72 | 0.119234 |
Target: 5'- cGGCGAACCGGCgGccgaaGCCGCaccgaCGCCg -3' miRNA: 3'- uCCGCUUGGCCGgCc----CGGCGca---GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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