Results 101 - 120 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 34783 | 0.67 | 0.270521 |
Target: 5'- cGGCGGAUCGGUgaaGGuGUgGCuUCGCCu -3' miRNA: 3'- uCCGCUUGGCCGg--CC-CGgCGcAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 17913 | 0.67 | 0.276926 |
Target: 5'- cGGCGAGCCGccgaUCGGcGCCGa--CGCCa -3' miRNA: 3'- uCCGCUUGGCc---GGCC-CGGCgcaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 4795 | 0.67 | 0.276926 |
Target: 5'- cGGGaucgGAGCCGGCCGcGuaGCGcugguuUCGCCg -3' miRNA: 3'- -UCCg---CUUGGCCGGCcCggCGC------AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 51543 | 0.66 | 0.303757 |
Target: 5'- cGGCG-ACCGGCuCGcguaccacguGGUCGCG-CGCg -3' miRNA: 3'- uCCGCuUGGCCG-GC----------CCGGCGCaGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 33739 | 0.66 | 0.303757 |
Target: 5'- aAGGCGaAGCUcGCCgaaGGcGCUGCGUaaCGCCa -3' miRNA: 3'- -UCCGC-UUGGcCGG---CC-CGGCGCA--GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 51379 | 0.67 | 0.276926 |
Target: 5'- -cGCGAcGCCGGCCaaGGCCGCGcCuGaCCg -3' miRNA: 3'- ucCGCU-UGGCCGGc-CCGGCGCaG-C-GG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 4125 | 0.67 | 0.283452 |
Target: 5'- -cGCGAaaGCCGGgcauaaaaaaaCGGcGCCGCGUggCGCCg -3' miRNA: 3'- ucCGCU--UGGCCg----------GCC-CGGCGCA--GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 108 | 0.68 | 0.260521 |
Target: 5'- -uGCGcaugucACCGGCCGGcgaccgaccuccauaGCagaaaGCGUCGCCg -3' miRNA: 3'- ucCGCu-----UGGCCGGCC---------------CGg----CGCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 16585 | 0.68 | 0.258069 |
Target: 5'- cAGGCGcguguGCUGGUCGaGGCgGCGaagcaGCCg -3' miRNA: 3'- -UCCGCu----UGGCCGGC-CCGgCGCag---CGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 59696 | 0.68 | 0.252021 |
Target: 5'- cGGCGuGCCGccacGCgGGcGCUaCGUCGCCg -3' miRNA: 3'- uCCGCuUGGC----CGgCC-CGGcGCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 5171 | 0.69 | 0.197799 |
Target: 5'- cGGUGA--CGGCCGGcGUCGCGggCGCg -3' miRNA: 3'- uCCGCUugGCCGGCC-CGGCGCa-GCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 14318 | 0.69 | 0.197799 |
Target: 5'- cGGCGGaaccGCCGaGCUGGGCgGCGaagUUGCg -3' miRNA: 3'- uCCGCU----UGGC-CGGCCCGgCGC---AGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 24816 | 0.69 | 0.201733 |
Target: 5'- aAGcGCGAGCucgcgaucgCGGCCGGcGCCGUGccgaucacccugCGCCa -3' miRNA: 3'- -UC-CGCUUG---------GCCGGCC-CGGCGCa-----------GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 35165 | 0.69 | 0.202727 |
Target: 5'- cGGGCGAcGCUGGCggcaaugaGGucacgaccGCCGCGUgGCCa -3' miRNA: 3'- -UCCGCU-UGGCCGg-------CC--------CGGCGCAgCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 5081 | 0.69 | 0.202727 |
Target: 5'- cGGCGcgugcGACCGGCUcGGCgGUGcgCGCCc -3' miRNA: 3'- uCCGC-----UUGGCCGGcCCGgCGCa-GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 56767 | 0.69 | 0.204226 |
Target: 5'- cGGGCGAcgagcgcuacaugaaGCUGGCCGgccugaaGGCCGaCGUCGa- -3' miRNA: 3'- -UCCGCU---------------UGGCCGGC-------CCGGC-GCAGCgg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 43670 | 0.68 | 0.252021 |
Target: 5'- uGGCGAccugaacgcaaGCCaaGCCGGGCCGaauUCGCg -3' miRNA: 3'- uCCGCU-----------UGGc-CGGCCCGGCgc-AGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 29944 | 0.68 | 0.252021 |
Target: 5'- aAGGaCGAcCCGGaCgCGGGCgGCGgcgaaggUGCCa -3' miRNA: 3'- -UCC-GCUuGGCC-G-GCCCGgCGCa------GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 4682 | 0.68 | 0.252021 |
Target: 5'- -cGCG-GCCGGaUCGGGCCGCGgcauccaGUCg -3' miRNA: 3'- ucCGCuUGGCC-GGCCCGGCGCag-----CGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 29434 | 0.67 | 0.282794 |
Target: 5'- cAGGCGAagGCCcGCaaGGCUGCGgcagaggcgcaggUCGCCg -3' miRNA: 3'- -UCCGCU--UGGcCGgcCCGGCGC-------------AGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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