miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 16973 0.66 0.320793
Target:  5'- cGGGCaccGAuauugcccugcugccGCCGGCCGaGCgCGCGcUCGUCg -3'
miRNA:   3'- -UCCG---CU---------------UGGCCGGCcCG-GCGC-AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 58952 0.66 0.320793
Target:  5'- cGGCGcgcagcagucgaaccAGCCGGCCGccGGCgGCcucaCGCCu -3'
miRNA:   3'- uCCGC---------------UUGGCCGGC--CCGgCGca--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 21510 0.66 0.317905
Target:  5'- -cGCGAgaacacgucGCCGGugcCCGuGCCGCucGUCGCCg -3'
miRNA:   3'- ucCGCU---------UGGCC---GGCcCGGCG--CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 22233 0.66 0.317905
Target:  5'- cGGCcGcgccgcccacGCCGGCCGGcCUGCGcaucacgccgUCGCCa -3'
miRNA:   3'- uCCGcU----------UGGCCGGCCcGGCGC----------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 48685 0.66 0.317905
Target:  5'- cAGcGCGuuCCaGCCGGacGCCGCGcCGCa -3'
miRNA:   3'- -UC-CGCuuGGcCGGCC--CGGCGCaGCGg -5'
24099 3' -64.8 NC_005262.1 + 45411 0.66 0.317905
Target:  5'- cAGGC-AGCCgcgcaaaacucGGCCGGGCUuauggGCGggcucggaaccaUCGCCg -3'
miRNA:   3'- -UCCGcUUGG-----------CCGGCCCGG-----CGC------------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 8949 0.66 0.317905
Target:  5'- uGaCGAGCCGGUCGGcgcGCUGCGU-GUCg -3'
miRNA:   3'- uCcGCUUGGCCGGCC---CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 10979 0.66 0.317905
Target:  5'- cGGCGcGCCGGgaaCGccGGUCGCGcUCGCa -3'
miRNA:   3'- uCCGCuUGGCCg--GC--CCGGCGC-AGCGg -5'
24099 3' -64.8 NC_005262.1 + 49193 0.66 0.317186
Target:  5'- cGGCGAugaucuccggcauGCUGGCCgaGGGCgGCcUCGgCg -3'
miRNA:   3'- uCCGCU-------------UGGCCGG--CCCGgCGcAGCgG- -5'
24099 3' -64.8 NC_005262.1 + 27547 0.66 0.317186
Target:  5'- aGGGCGAGcucagccCCGGCgaGGacGCCGCGcagCGCg -3'
miRNA:   3'- -UCCGCUU-------GGCCGg-CC--CGGCGCa--GCGg -5'
24099 3' -64.8 NC_005262.1 + 51110 0.66 0.312898
Target:  5'- aAGGCGAucgugcucgacgcGCCGGUCGacaaggcgcucgacGCCGUgaagaaGUCGCCg -3'
miRNA:   3'- -UCCGCU-------------UGGCCGGCc-------------CGGCG------CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 9179 0.66 0.31077
Target:  5'- cGGCGGACCacgaGCCGaGCCGCGagUUGUa -3'
miRNA:   3'- uCCGCUUGGc---CGGCcCGGCGC--AGCGg -5'
24099 3' -64.8 NC_005262.1 + 2647 0.66 0.31077
Target:  5'- cGGCccauGCCugcgcggcGCCGGGCgGCGUCcugGCCg -3'
miRNA:   3'- uCCGcu--UGGc-------CGGCCCGgCGCAG---CGG- -5'
24099 3' -64.8 NC_005262.1 + 3590 0.66 0.31077
Target:  5'- uGcCGAccucGCCGGCCGGcuccuuGCCG-GUUGCCg -3'
miRNA:   3'- uCcGCU----UGGCCGGCC------CGGCgCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 42375 0.66 0.310063
Target:  5'- gAGGUGAACUGGCa-GGCCGgacagacCGUCaCCc -3'
miRNA:   3'- -UCCGCUUGGCCGgcCCGGC-------GCAGcGG- -5'
24099 3' -64.8 NC_005262.1 + 945 0.66 0.309357
Target:  5'- cGGGCGugccauccucguACCGcgucgaGCCGuGGCCGaucgucggcaCGUCGCCu -3'
miRNA:   3'- -UCCGCu-----------UGGC------CGGC-CCGGC----------GCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 58566 0.66 0.306548
Target:  5'- cGGCGAgaagcugaucggcacGCCGGCauggaauGGGCUGaUGgggCGCCu -3'
miRNA:   3'- uCCGCU---------------UGGCCGg------CCCGGC-GCa--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 60152 0.66 0.303757
Target:  5'- uGGGCGAAguacCCGGCC--GCCGUGaaggCGCUc -3'
miRNA:   3'- -UCCGCUU----GGCCGGccCGGCGCa---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 51543 0.66 0.303757
Target:  5'- cGGCG-ACCGGCuCGcguaccacguGGUCGCG-CGCg -3'
miRNA:   3'- uCCGCuUGGCCG-GC----------CCGGCGCaGCGg -5'
24099 3' -64.8 NC_005262.1 + 33739 0.66 0.303757
Target:  5'- aAGGCGaAGCUcGCCgaaGGcGCUGCGUaaCGCCa -3'
miRNA:   3'- -UCCGC-UUGGcCGG---CC-CGGCGCA--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.