miRNA display CGI


Results 41 - 50 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 5' -53.9 NC_005262.1 + 53920 0.7 0.602871
Target:  5'- ---cGACGCGcuGAAGCaggcgcagcucgaccAGCUCACGGa -3'
miRNA:   3'- ccucCUGCGCuuCUUCG---------------UCGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 56105 0.68 0.738385
Target:  5'- cGAGGAgGCGGcgcagcucucacAGAucuuuGGCGugccGCUCGCGGa -3'
miRNA:   3'- cCUCCUgCGCU------------UCU-----UCGU----CGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 56716 0.69 0.685395
Target:  5'- uGGAGGACGUGuccGAGGCgucGGCguucgaCAUGGc -3'
miRNA:   3'- -CCUCCUGCGCuu-CUUCG---UCGa-----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 56880 0.66 0.826251
Target:  5'- cGAGGAaacgaGCGGAuGAAGUggGGCaCGCGGc -3'
miRNA:   3'- cCUCCUg----CGCUU-CUUCG--UCGaGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 57477 0.67 0.798395
Target:  5'- cGGcGGGCGcCGAcgAGAGGCGGCcgGCGa -3'
miRNA:   3'- -CCuCCUGC-GCU--UCUUCGUCGagUGCc -5'
24099 5' -53.9 NC_005262.1 + 59164 1.14 0.000923
Target:  5'- uGGAGGACGCGAAGAAGCAGCUCACGGg -3'
miRNA:   3'- -CCUCCUGCGCUUCUUCGUCGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 60124 0.66 0.826251
Target:  5'- cGAGGGCGCcAGcGucGCGGCgaaggCAUGGg -3'
miRNA:   3'- cCUCCUGCGcUU-CuuCGUCGa----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 61127 0.67 0.778958
Target:  5'- aGGGGacgguguacGACGCGcuGgcGCAGCagaUCGCGGc -3'
miRNA:   3'- -CCUC---------CUGCGCuuCuuCGUCG---AGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 61434 0.73 0.433554
Target:  5'- cGAGGAauuccacguCGCGAAGAAgGCGGCggACGGc -3'
miRNA:   3'- cCUCCU---------GCGCUUCUU-CGUCGagUGCC- -5'
24099 5' -53.9 NC_005262.1 + 61641 0.68 0.727953
Target:  5'- cGAGGGCGagGAGGAAGU-GCUguacCGCGGc -3'
miRNA:   3'- cCUCCUGCg-CUUCUUCGuCGA----GUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.