miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 5' -53.9 NC_005262.1 + 43577 0.66 0.860557
Target:  5'- --uGGGCgcuGCGAuuGAGGCGGCUUugGa -3'
miRNA:   3'- ccuCCUG---CGCUu-CUUCGUCGAGugCc -5'
24099 5' -53.9 NC_005262.1 + 43326 0.68 0.738385
Target:  5'- aGGAGGAagcCGCuGAAcAGGCGGCgaucgaCGCGGc -3'
miRNA:   3'- -CCUCCU---GCG-CUUcUUCGUCGa-----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 40598 0.67 0.788757
Target:  5'- uGAcGGugGCGcAGAugccGCAGCauaaUCACGGc -3'
miRNA:   3'- cCU-CCugCGCuUCUu---CGUCG----AGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 40519 0.7 0.63115
Target:  5'- gGGGcGGGCGUGAAGAAGCG----ACGGg -3'
miRNA:   3'- -CCU-CCUGCGCUUCUUCGUcgagUGCC- -5'
24099 5' -53.9 NC_005262.1 + 37885 0.67 0.788757
Target:  5'- cGGAGGcACGgGcGGGAAGUauGGUggCGCGGg -3'
miRNA:   3'- -CCUCC-UGCgC-UUCUUCG--UCGa-GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 36177 0.77 0.263088
Target:  5'- aGGAGG-CGCGAGu--GCAGCUCgACGGc -3'
miRNA:   3'- -CCUCCuGCGCUUcuuCGUCGAG-UGCC- -5'
24099 5' -53.9 NC_005262.1 + 35221 0.71 0.541655
Target:  5'- -aAGGAUGCGGAGGucggcggcgcgaucGGCAGCggCugGGc -3'
miRNA:   3'- ccUCCUGCGCUUCU--------------UCGUCGa-GugCC- -5'
24099 5' -53.9 NC_005262.1 + 32296 0.73 0.443143
Target:  5'- --cGGGCGCGAAcgucGAGGCAGCgcgugcgcuguUCAUGGg -3'
miRNA:   3'- ccuCCUGCGCUU----CUUCGUCG-----------AGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 28946 0.66 0.859743
Target:  5'- uGAGGgucaugugcucgcGCGCGAGGAAGUcggggAGCUgAuCGGc -3'
miRNA:   3'- cCUCC-------------UGCGCUUCUUCG-----UCGAgU-GCC- -5'
24099 5' -53.9 NC_005262.1 + 25735 0.68 0.717426
Target:  5'- cGAGGcgauCGCGcAGGccGGCAagccGCUCACGGc -3'
miRNA:   3'- cCUCCu---GCGCuUCU--UCGU----CGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 24916 0.71 0.576911
Target:  5'- cGGAGGACGcCGAGGcauGGCGGgaUGCGc -3'
miRNA:   3'- -CCUCCUGC-GCUUCu--UCGUCgaGUGCc -5'
24099 5' -53.9 NC_005262.1 + 24327 0.66 0.826251
Target:  5'- uGGucGGCGCGAucGAcauGCGGCUCugcguCGGc -3'
miRNA:   3'- -CCucCUGCGCUu-CUu--CGUCGAGu----GCC- -5'
24099 5' -53.9 NC_005262.1 + 21530 0.68 0.717426
Target:  5'- --cGGAaGCGGu---GCAGCUCGCGGu -3'
miRNA:   3'- ccuCCUgCGCUucuuCGUCGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 17586 0.66 0.852311
Target:  5'- cGAGGAgaaGCuGgcGgcGCAGCgCGCGGa -3'
miRNA:   3'- cCUCCUg--CG-CuuCuuCGUCGaGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 17546 0.73 0.452851
Target:  5'- cGGucGcGCGCGAGGcGGCAGC-CGCGGc -3'
miRNA:   3'- -CCucC-UGCGCUUCuUCGUCGaGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 17312 0.66 0.82535
Target:  5'- aGGAGGAagcagacCGC-AAGGAGCgcgAGCgcgUCGCGGc -3'
miRNA:   3'- -CCUCCU-------GCGcUUCUUCG---UCG---AGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 16598 0.7 0.609388
Target:  5'- uGGucGAgGCGgcGAAGCAGC-CGCGu -3'
miRNA:   3'- -CCucCUgCGCuuCUUCGUCGaGUGCc -5'
24099 5' -53.9 NC_005262.1 + 16542 0.66 0.817153
Target:  5'- cGAaGAUGCGAAGccGCucccGUUCACGGc -3'
miRNA:   3'- cCUcCUGCGCUUCuuCGu---CGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 15827 0.72 0.492786
Target:  5'- gGGAGaGGCGCG-AGAGGUcGUUCGCGc -3'
miRNA:   3'- -CCUC-CUGCGCuUCUUCGuCGAGUGCc -5'
24099 5' -53.9 NC_005262.1 + 15586 0.68 0.758926
Target:  5'- uGGAGGcgcgcgcGCGCGAGGAGcgcguGCGGCaggagcgcaucgaggCGCGGc -3'
miRNA:   3'- -CCUCC-------UGCGCUUCUU-----CGUCGa--------------GUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.