miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 5' -53.9 NC_005262.1 + 9468 0.67 0.807864
Target:  5'- cGAGGugccgaGCGCGucGAugacguccuGGCGGCUCAUGu -3'
miRNA:   3'- cCUCC------UGCGCuuCU---------UCGUCGAGUGCc -5'
24099 5' -53.9 NC_005262.1 + 10461 0.66 0.817153
Target:  5'- --cGGuCgGCGAGGuAGCGGCgcgCGCGGu -3'
miRNA:   3'- ccuCCuG-CGCUUCuUCGUCGa--GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 56880 0.66 0.826251
Target:  5'- cGAGGAaacgaGCGGAuGAAGUggGGCaCGCGGc -3'
miRNA:   3'- cCUCCUg----CGCUU-CUUCG--UCGaGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 51195 0.66 0.829835
Target:  5'- gGGAGGGCGCGcucauccgcgAcgccucgccggcggcAGcAGCAGCUCgACGa -3'
miRNA:   3'- -CCUCCUGCGC----------U---------------UCuUCGUCGAG-UGCc -5'
24099 5' -53.9 NC_005262.1 + 13792 0.66 0.843839
Target:  5'- cGGuGGGCGCc--GgcGCGGCUUcaucgGCGGg -3'
miRNA:   3'- -CCuCCUGCGcuuCuuCGUCGAG-----UGCC- -5'
24099 5' -53.9 NC_005262.1 + 9683 0.66 0.852311
Target:  5'- cGAGGGCGCcgucgacgucGAGgcGCAGCa-GCGGg -3'
miRNA:   3'- cCUCCUGCGc---------UUCuuCGUCGagUGCC- -5'
24099 5' -53.9 NC_005262.1 + 28946 0.66 0.859743
Target:  5'- uGAGGgucaugugcucgcGCGCGAGGAAGUcggggAGCUgAuCGGc -3'
miRNA:   3'- cCUCC-------------UGCGCUUCUUCG-----UCGAgU-GCC- -5'
24099 5' -53.9 NC_005262.1 + 43577 0.66 0.860557
Target:  5'- --uGGGCgcuGCGAuuGAGGCGGCUUugGa -3'
miRNA:   3'- ccuCCUG---CGCUu-CUUCGUCGAGugCc -5'
24099 5' -53.9 NC_005262.1 + 10627 0.66 0.860557
Target:  5'- cGAcGGACGCGAAG-GGCGGgUUGCc- -3'
miRNA:   3'- cCU-CCUGCGCUUCuUCGUCgAGUGcc -5'
24099 5' -53.9 NC_005262.1 + 36177 0.77 0.263088
Target:  5'- aGGAGG-CGCGAGu--GCAGCUCgACGGc -3'
miRNA:   3'- -CCUCCuGCGCUUcuuCGUCGAG-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.