miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 5' -53.9 NC_005262.1 + 17312 0.66 0.82535
Target:  5'- aGGAGGAagcagacCGC-AAGGAGCgcgAGCgcgUCGCGGc -3'
miRNA:   3'- -CCUCCU-------GCGcUUCUUCG---UCG---AGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 60124 0.66 0.826251
Target:  5'- cGAGGGCGCcAGcGucGCGGCgaaggCAUGGg -3'
miRNA:   3'- cCUCCUGCGcUU-CuuCGUCGa----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 17546 0.73 0.452851
Target:  5'- cGGucGcGCGCGAGGcGGCAGC-CGCGGc -3'
miRNA:   3'- -CCucC-UGCGCUUCuUCGUCGaGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 37885 0.67 0.788757
Target:  5'- cGGAGGcACGgGcGGGAAGUauGGUggCGCGGg -3'
miRNA:   3'- -CCUCC-UGCgC-UUCUUCG--UCGa-GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 61127 0.67 0.778958
Target:  5'- aGGGGacgguguacGACGCGcuGgcGCAGCagaUCGCGGc -3'
miRNA:   3'- -CCUC---------CUGCGCuuCuuCGUCG---AGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 367 0.73 0.452851
Target:  5'- -uGGGugGCGAGGAugucagcgAGCAGCcCGCGa -3'
miRNA:   3'- ccUCCugCGCUUCU--------UCGUCGaGUGCc -5'
24099 5' -53.9 NC_005262.1 + 64 0.72 0.482645
Target:  5'- gGGAGGccgcggcuCGCGAAGAAGuCGGC-CGCGc -3'
miRNA:   3'- -CCUCCu-------GCGCUUCUUC-GUCGaGUGCc -5'
24099 5' -53.9 NC_005262.1 + 24916 0.71 0.576911
Target:  5'- cGGAGGACGcCGAGGcauGGCGGgaUGCGc -3'
miRNA:   3'- -CCUCCUGC-GCUUCu--UCGUCgaGUGCc -5'
24099 5' -53.9 NC_005262.1 + 52413 0.71 0.587703
Target:  5'- uGGAGGcgauCGCGGAGgcGCGGCaaagCGCa- -3'
miRNA:   3'- -CCUCCu---GCGCUUCuuCGUCGa---GUGcc -5'
24099 5' -53.9 NC_005262.1 + 53920 0.7 0.602871
Target:  5'- ---cGACGCGcuGAAGCaggcgcagcucgaccAGCUCACGGa -3'
miRNA:   3'- ccucCUGCGCuuCUUCG---------------UCGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 16598 0.7 0.609388
Target:  5'- uGGucGAgGCGgcGAAGCAGC-CGCGu -3'
miRNA:   3'- -CCucCUgCGCuuCUUCGUCGaGUGCc -5'
24099 5' -53.9 NC_005262.1 + 49154 0.7 0.630061
Target:  5'- cGGuGGGCGUGcAGGccgcaucggccgcAGCGGCgcgCACGGc -3'
miRNA:   3'- -CCuCCUGCGCuUCU-------------UCGUCGa--GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 12820 0.7 0.63115
Target:  5'- --cGGcGCGUGAAGAAggagcGCGGCcUCGCGGg -3'
miRNA:   3'- ccuCC-UGCGCUUCUU-----CGUCG-AGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 50455 0.7 0.642037
Target:  5'- ----cGCGCGAGGAGGaCGGCcgCACGGu -3'
miRNA:   3'- ccuccUGCGCUUCUUC-GUCGa-GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 53468 0.69 0.706817
Target:  5'- cGAGGACaacgGCGu-GAAGUGGCUCggcACGGc -3'
miRNA:   3'- cCUCCUG----CGCuuCUUCGUCGAG---UGCC- -5'
24099 5' -53.9 NC_005262.1 + 21530 0.68 0.717426
Target:  5'- --cGGAaGCGGu---GCAGCUCGCGGu -3'
miRNA:   3'- ccuCCUgCGCUucuuCGUCGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 25735 0.68 0.717426
Target:  5'- cGAGGcgauCGCGcAGGccGGCAagccGCUCACGGc -3'
miRNA:   3'- cCUCCu---GCGCuUCU--UCGU----CGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 61641 0.68 0.727953
Target:  5'- cGAGGGCGagGAGGAAGU-GCUguacCGCGGc -3'
miRNA:   3'- cCUCCUGCg-CUUCUUCGuCGA----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 43326 0.68 0.738385
Target:  5'- aGGAGGAagcCGCuGAAcAGGCGGCgaucgaCGCGGc -3'
miRNA:   3'- -CCUCCU---GCG-CUUcUUCGUCGa-----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 15586 0.68 0.758926
Target:  5'- uGGAGGcgcgcgcGCGCGAGGAGcgcguGCGGCaggagcgcaucgaggCGCGGc -3'
miRNA:   3'- -CCUCC-------UGCGCUUCUU-----CGUCGa--------------GUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.