miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 5' -53.9 NC_005262.1 + 15586 0.68 0.758926
Target:  5'- uGGAGGcgcgcgcGCGCGAGGAGcgcguGCGGCaggagcgcaucgaggCGCGGc -3'
miRNA:   3'- -CCUCC-------UGCGCUUCUU-----CGUCGa--------------GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 43326 0.68 0.738385
Target:  5'- aGGAGGAagcCGCuGAAcAGGCGGCgaucgaCGCGGc -3'
miRNA:   3'- -CCUCCU---GCG-CUUcUUCGUCGa-----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 61641 0.68 0.727953
Target:  5'- cGAGGGCGagGAGGAAGU-GCUguacCGCGGc -3'
miRNA:   3'- cCUCCUGCg-CUUCUUCGuCGA----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 25735 0.68 0.717426
Target:  5'- cGAGGcgauCGCGcAGGccGGCAagccGCUCACGGc -3'
miRNA:   3'- cCUCCu---GCGCuUCU--UCGU----CGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 21530 0.68 0.717426
Target:  5'- --cGGAaGCGGu---GCAGCUCGCGGu -3'
miRNA:   3'- ccuCCUgCGCUucuuCGUCGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 53468 0.69 0.706817
Target:  5'- cGAGGACaacgGCGu-GAAGUGGCUCggcACGGc -3'
miRNA:   3'- cCUCCUG----CGCuuCUUCGUCGAG---UGCC- -5'
24099 5' -53.9 NC_005262.1 + 56716 0.69 0.685395
Target:  5'- uGGAGGACGUGuccGAGGCgucGGCguucgaCAUGGc -3'
miRNA:   3'- -CCUCCUGCGCuu-CUUCG---UCGa-----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 47643 0.69 0.662689
Target:  5'- cGGAGGacaagaaGCGCGAGGcgaucGAGCAGgaCAUGa -3'
miRNA:   3'- -CCUCC-------UGCGCUUC-----UUCGUCgaGUGCc -5'
24099 5' -53.9 NC_005262.1 + 50455 0.7 0.642037
Target:  5'- ----cGCGCGAGGAGGaCGGCcgCACGGu -3'
miRNA:   3'- ccuccUGCGCUUCUUC-GUCGa-GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 59164 1.14 0.000923
Target:  5'- uGGAGGACGCGAAGAAGCAGCUCACGGg -3'
miRNA:   3'- -CCUCCUGCGCUUCUUCGUCGAGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.