Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 61127 | 0.67 | 0.778958 |
Target: 5'- aGGGGacgguguacGACGCGcuGgcGCAGCagaUCGCGGc -3' miRNA: 3'- -CCUC---------CUGCGCuuCuuCGUCG---AGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 44913 | 0.67 | 0.769011 |
Target: 5'- gGGAcuGGAUGCGGcgcaAGgcGCuGCUC-CGGa -3' miRNA: 3'- -CCU--CCUGCGCU----UCuuCGuCGAGuGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 52972 | 0.67 | 0.768009 |
Target: 5'- cGGcGGACGCGcaugcgcuGGucgugaucgucgcGGCAGCUCGCGc -3' miRNA: 3'- -CCuCCUGCGCuu------CU-------------UCGUCGAGUGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 15586 | 0.68 | 0.758926 |
Target: 5'- uGGAGGcgcgcgcGCGCGAGGAGcgcguGCGGCaggagcgcaucgaggCGCGGc -3' miRNA: 3'- -CCUCC-------UGCGCUUCUU-----CGUCGa--------------GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 43326 | 0.68 | 0.738385 |
Target: 5'- aGGAGGAagcCGCuGAAcAGGCGGCgaucgaCGCGGc -3' miRNA: 3'- -CCUCCU---GCG-CUUcUUCGUCGa-----GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 56105 | 0.68 | 0.738385 |
Target: 5'- cGAGGAgGCGGcgcagcucucacAGAucuuuGGCGugccGCUCGCGGa -3' miRNA: 3'- cCUCCUgCGCU------------UCU-----UCGU----CGAGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 61641 | 0.68 | 0.727953 |
Target: 5'- cGAGGGCGagGAGGAAGU-GCUguacCGCGGc -3' miRNA: 3'- cCUCCUGCg-CUUCUUCGuCGA----GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 25735 | 0.68 | 0.717426 |
Target: 5'- cGAGGcgauCGCGcAGGccGGCAagccGCUCACGGc -3' miRNA: 3'- cCUCCu---GCGCuUCU--UCGU----CGAGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 21530 | 0.68 | 0.717426 |
Target: 5'- --cGGAaGCGGu---GCAGCUCGCGGu -3' miRNA: 3'- ccuCCUgCGCUucuuCGUCGAGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 53468 | 0.69 | 0.706817 |
Target: 5'- cGAGGACaacgGCGu-GAAGUGGCUCggcACGGc -3' miRNA: 3'- cCUCCUG----CGCuuCUUCGUCGAG---UGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 56716 | 0.69 | 0.685395 |
Target: 5'- uGGAGGACGUGuccGAGGCgucGGCguucgaCAUGGc -3' miRNA: 3'- -CCUCCUGCGCuu-CUUCG---UCGa-----GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 47643 | 0.69 | 0.662689 |
Target: 5'- cGGAGGacaagaaGCGCGAGGcgaucGAGCAGgaCAUGa -3' miRNA: 3'- -CCUCC-------UGCGCUUC-----UUCGUCgaGUGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 50455 | 0.7 | 0.642037 |
Target: 5'- ----cGCGCGAGGAGGaCGGCcgCACGGu -3' miRNA: 3'- ccuccUGCGCUUCUUC-GUCGa-GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 12820 | 0.7 | 0.63115 |
Target: 5'- --cGGcGCGUGAAGAAggagcGCGGCcUCGCGGg -3' miRNA: 3'- ccuCC-UGCGCUUCUU-----CGUCG-AGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 40519 | 0.7 | 0.63115 |
Target: 5'- gGGGcGGGCGUGAAGAAGCG----ACGGg -3' miRNA: 3'- -CCU-CCUGCGCUUCUUCGUcgagUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 49154 | 0.7 | 0.630061 |
Target: 5'- cGGuGGGCGUGcAGGccgcaucggccgcAGCGGCgcgCACGGc -3' miRNA: 3'- -CCuCCUGCGCuUCU-------------UCGUCGa--GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 16598 | 0.7 | 0.609388 |
Target: 5'- uGGucGAgGCGgcGAAGCAGC-CGCGu -3' miRNA: 3'- -CCucCUgCGCuuCUUCGUCGaGUGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 53920 | 0.7 | 0.602871 |
Target: 5'- ---cGACGCGcuGAAGCaggcgcagcucgaccAGCUCACGGa -3' miRNA: 3'- ccucCUGCGCuuCUUCG---------------UCGAGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 52413 | 0.71 | 0.587703 |
Target: 5'- uGGAGGcgauCGCGGAGgcGCGGCaaagCGCa- -3' miRNA: 3'- -CCUCCu---GCGCUUCuuCGUCGa---GUGcc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 24916 | 0.71 | 0.576911 |
Target: 5'- cGGAGGACGcCGAGGcauGGCGGgaUGCGc -3' miRNA: 3'- -CCUCCUGC-GCUUCu--UCGUCgaGUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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