miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 3' -55.9 NC_005262.1 + 26031 0.67 0.636765
Target:  5'- cUACGCCc-AGCAGCUCGccgcggcgcgcaagcAGGGGC-GCa -3'
miRNA:   3'- -GUGCGGacUUGUCGAGC---------------UCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 30856 0.67 0.632394
Target:  5'- gACGUCggGAugACGGC-CGAGGAGUcGCc -3'
miRNA:   3'- gUGCGGa-CU--UGUCGaGCUCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 40356 0.67 0.632394
Target:  5'- uGCGCCagucgucGGACGGCUCGAuGAcgcggcucauGCUGCc -3'
miRNA:   3'- gUGCGGa------CUUGUCGAGCUcCU----------CGACG- -5'
24100 3' -55.9 NC_005262.1 + 47227 0.67 0.632394
Target:  5'- aCGCGCCUGcuCGGCauccgCGgccgugaacGGGAGCgGCu -3'
miRNA:   3'- -GUGCGGACuuGUCGa----GC---------UCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 51215 0.67 0.621469
Target:  5'- gACGCCUcgccggcggcaGcAGCAGCUCGAcGAGCgccGCc -3'
miRNA:   3'- gUGCGGA-----------C-UUGUCGAGCUcCUCGa--CG- -5'
24100 3' -55.9 NC_005262.1 + 646 0.67 0.610552
Target:  5'- aGCGCUUGuuCGGUUugccguugaCGAGGGuGCUGCa -3'
miRNA:   3'- gUGCGGACuuGUCGA---------GCUCCU-CGACG- -5'
24100 3' -55.9 NC_005262.1 + 13025 0.68 0.588785
Target:  5'- gCGCGCCaagGGcuacGCGGUgcgCGucGAGCUGCg -3'
miRNA:   3'- -GUGCGGa--CU----UGUCGa--GCucCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 15127 0.68 0.57795
Target:  5'- aACGCgCUGGccgGCAGCUUGucGAGCUccuGCu -3'
miRNA:   3'- gUGCG-GACU---UGUCGAGCucCUCGA---CG- -5'
24100 3' -55.9 NC_005262.1 + 28101 0.68 0.57147
Target:  5'- gACGCCgGAGCGgaugcuuccgugcccGCUCGAcgugagcacGAGCUGCg -3'
miRNA:   3'- gUGCGGaCUUGU---------------CGAGCUc--------CUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 28898 0.68 0.556421
Target:  5'- aACGUCUGcuucGGCAGCaUGAGGAuGCUcGCg -3'
miRNA:   3'- gUGCGGAC----UUGUCGaGCUCCU-CGA-CG- -5'
24100 3' -55.9 NC_005262.1 + 18078 0.68 0.556421
Target:  5'- gAUGCC-GAACuGCUCGAucacGGccGGCUGCc -3'
miRNA:   3'- gUGCGGaCUUGuCGAGCU----CC--UCGACG- -5'
24100 3' -55.9 NC_005262.1 + 52834 0.69 0.53513
Target:  5'- gCGCGCC-GAACAGCgCGAaugccuGCUGCg -3'
miRNA:   3'- -GUGCGGaCUUGUCGaGCUccu---CGACG- -5'
24100 3' -55.9 NC_005262.1 + 45264 0.69 0.503759
Target:  5'- -gUGCCggucgGGGCuauAGCuUCGAGGuGCUGCg -3'
miRNA:   3'- guGCGGa----CUUG---UCG-AGCUCCuCGACG- -5'
24100 3' -55.9 NC_005262.1 + 9854 0.69 0.493478
Target:  5'- aCGCGCCauccGugAGCUgGucGAGCUGCg -3'
miRNA:   3'- -GUGCGGac--UugUCGAgCucCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 8258 0.7 0.463238
Target:  5'- gCGCGCgaaAGCAGCggcCGAGGAaGCUGCc -3'
miRNA:   3'- -GUGCGgacUUGUCGa--GCUCCU-CGACG- -5'
24100 3' -55.9 NC_005262.1 + 48605 0.7 0.453374
Target:  5'- --gGCCUGcaaucGCAGCUCGAcgaGGAGgaGCc -3'
miRNA:   3'- gugCGGACu----UGUCGAGCU---CCUCgaCG- -5'
24100 3' -55.9 NC_005262.1 + 56545 0.7 0.453374
Target:  5'- -cCGUC-GAGCAGCgCGAGGGGC-GCa -3'
miRNA:   3'- guGCGGaCUUGUCGaGCUCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 54445 0.7 0.453374
Target:  5'- gCGCGCCgaccgGAAguauCAGCgcaacgUCGAGGcGCUGCu -3'
miRNA:   3'- -GUGCGGa----CUU----GUCG------AGCUCCuCGACG- -5'
24100 3' -55.9 NC_005262.1 + 43135 0.71 0.433997
Target:  5'- uGCGCCUGGAUcug-UGAGGAGCcgGCa -3'
miRNA:   3'- gUGCGGACUUGucgaGCUCCUCGa-CG- -5'
24100 3' -55.9 NC_005262.1 + 15721 0.71 0.424491
Target:  5'- gGCGCC-GGGCGGCUCGucgcGGcAGgUGCg -3'
miRNA:   3'- gUGCGGaCUUGUCGAGCu---CC-UCgACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.