miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 29524 0.72 0.354556
Target:  5'- aCAGCGCGCgGUAGcAGauguaGAGACGAGCa -3'
miRNA:   3'- -GUCGUGCG-CGUCcUCg----CUUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 52188 0.72 0.345479
Target:  5'- gGGCaugaccaGCGUGCAGGAGuCGAagcgccugcacGACGAGCu -3'
miRNA:   3'- gUCG-------UGCGCGUCCUC-GCU-----------UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 34105 0.72 0.362953
Target:  5'- gGGCGguUGCGCAGGAuucGCGGGuUGGGCGg -3'
miRNA:   3'- gUCGU--GCGCGUCCU---CGCUUuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 11832 0.72 0.354556
Target:  5'- aCAGUuucgaGCGCAGGcGCGc-GCGAGCGg -3'
miRNA:   3'- -GUCGug---CGCGUCCuCGCuuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 20873 0.72 0.345479
Target:  5'- -cGCGCGCGCcGGAcgacgacGCGAcGACGAGCc -3'
miRNA:   3'- guCGUGCGCGuCCU-------CGCU-UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 17798 0.72 0.354556
Target:  5'- -uGCGCGUGCAGGAacGCGAAcACGcGGCu -3'
miRNA:   3'- guCGUGCGCGUCCU--CGCUU-UGC-UCGc -5'
24100 5' -56.5 NC_005262.1 + 10832 0.72 0.360419
Target:  5'- -cGCAUGCGCguccgccgcgcucaGGGGGCGgcAUGAGUGa -3'
miRNA:   3'- guCGUGCGCG--------------UCCUCGCuuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 37888 0.72 0.362953
Target:  5'- aGGCACGgGCGGGAaguaugGUGgcGCGGGCu -3'
miRNA:   3'- gUCGUGCgCGUCCU------CGCuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 8051 0.72 0.330196
Target:  5'- gCAGCGCGCGUucugGGuGAGCGugGgGAGCa -3'
miRNA:   3'- -GUCGUGCGCG----UC-CUCGCuuUgCUCGc -5'
24100 5' -56.5 NC_005262.1 + 43782 0.71 0.406964
Target:  5'- gAGCGCGUagugcagcagauGCAGGAGCuuu-CGGGCGa -3'
miRNA:   3'- gUCGUGCG------------CGUCCUCGcuuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 5354 0.71 0.406964
Target:  5'- -cGCACGCcuGCcGGGGCGuccuuGACGGGCa -3'
miRNA:   3'- guCGUGCG--CGuCCUCGCu----UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 34502 0.71 0.371487
Target:  5'- gCGGCGCGCGacuucuGCGAGACGAcGCGg -3'
miRNA:   3'- -GUCGUGCGCguccu-CGCUUUGCU-CGC- -5'
24100 5' -56.5 NC_005262.1 + 38545 0.71 0.388074
Target:  5'- aGGCG-GCGCAGGAgccggcguugcgcGCGGuuCGGGCGg -3'
miRNA:   3'- gUCGUgCGCGUCCU-------------CGCUuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 51169 0.71 0.371487
Target:  5'- gAGCGCGCaGCAGGcAGCc-GACGAcGCGg -3'
miRNA:   3'- gUCGUGCG-CGUCC-UCGcuUUGCU-CGC- -5'
24100 5' -56.5 NC_005262.1 + 25377 0.7 0.463969
Target:  5'- gCGGCAucauCGCGCAGGAucGgGAGACGgccgaGGCGc -3'
miRNA:   3'- -GUCGU----GCGCGUCCU--CgCUUUGC-----UCGC- -5'
24100 5' -56.5 NC_005262.1 + 61618 0.7 0.41616
Target:  5'- aAGCGCGCGCgccugaAGGAGCucGA-GGGCGa -3'
miRNA:   3'- gUCGUGCGCG------UCCUCGcuUUgCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 23338 0.7 0.452228
Target:  5'- gAGCACGCGCucgaccacggccGGcGUGAAGCGcGCGg -3'
miRNA:   3'- gUCGUGCGCGu-----------CCuCGCUUUGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 21245 0.7 0.454174
Target:  5'- aCGGCACGa--AGGcGGCGAucCGAGCGg -3'
miRNA:   3'- -GUCGUGCgcgUCC-UCGCUuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 12488 0.7 0.454174
Target:  5'- gCGGCAUaCGCAGuGAGCGAAACc-GCGc -3'
miRNA:   3'- -GUCGUGcGCGUC-CUCGCUUUGcuCGC- -5'
24100 5' -56.5 NC_005262.1 + 51426 0.7 0.463969
Target:  5'- gCGGCGCGCGCGaGGGCGAuaccgucacGACGuccGCa -3'
miRNA:   3'- -GUCGUGCGCGUcCUCGCU---------UUGCu--CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.