Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24100 | 5' | -56.5 | NC_005262.1 | + | 12488 | 0.7 | 0.454174 |
Target: 5'- gCGGCAUaCGCAGuGAGCGAAACc-GCGc -3' miRNA: 3'- -GUCGUGcGCGUC-CUCGCUUUGcuCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 25377 | 0.7 | 0.463969 |
Target: 5'- gCGGCAucauCGCGCAGGAucGgGAGACGgccgaGGCGc -3' miRNA: 3'- -GUCGU----GCGCGUCCU--CgCUUUGC-----UCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 51426 | 0.7 | 0.463969 |
Target: 5'- gCGGCGCGCGCGaGGGCGAuaccgucacGACGuccGCa -3' miRNA: 3'- -GUCGUGCGCGUcCUCGCU---------UUGCu--CGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 61965 | 0.7 | 0.463969 |
Target: 5'- -cGCAUGCGCAGccuGCG--GCGAGCa -3' miRNA: 3'- guCGUGCGCGUCcu-CGCuuUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 10559 | 0.7 | 0.467918 |
Target: 5'- cCGGcCGCGCGCAgccgcagcguaccgcGGAgcagcGCGgcGCGAGCGg -3' miRNA: 3'- -GUC-GUGCGCGU---------------CCU-----CGCuuUGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 7268 | 0.69 | 0.473874 |
Target: 5'- aCGGCACaccaGCAGGGGUGucgccgauuCGAGCGg -3' miRNA: 3'- -GUCGUGcg--CGUCCUCGCuuu------GCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 38968 | 0.69 | 0.483883 |
Target: 5'- uCGGCACgGCGCcGGccGCGAucGCGAGCu -3' miRNA: 3'- -GUCGUG-CGCGuCCu-CGCUu-UGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 12194 | 0.69 | 0.483883 |
Target: 5'- gAGCAaauCGCGCAGauGGCGA-ACGAGCu -3' miRNA: 3'- gUCGU---GCGCGUCc-UCGCUuUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 45083 | 0.69 | 0.493993 |
Target: 5'- -cGCGCGCGCAGGAcacguugaccGCGcucaacucGGCGGGUGc -3' miRNA: 3'- guCGUGCGCGUCCU----------CGCu-------UUGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 11951 | 0.69 | 0.493993 |
Target: 5'- -cGCACGCGCuGGGGauCGAcGGCGAuGCGu -3' miRNA: 3'- guCGUGCGCGuCCUC--GCU-UUGCU-CGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 50127 | 0.69 | 0.504198 |
Target: 5'- gAGCGCuCGCugaccGAGUGGAGCGAGCc -3' miRNA: 3'- gUCGUGcGCGuc---CUCGCUUUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 13392 | 0.69 | 0.504198 |
Target: 5'- gGGCGCGCGCAuccacGAGCuccgcgaGAGCGGGCa -3' miRNA: 3'- gUCGUGCGCGUc----CUCGc------UUUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 3826 | 0.69 | 0.514494 |
Target: 5'- -uGCAUGCGCgccugaucgAGcGGGCGAAucugcuucGCGAGCGc -3' miRNA: 3'- guCGUGCGCG---------UC-CUCGCUU--------UGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 45325 | 0.69 | 0.523832 |
Target: 5'- aCGGCGCGaUGCaAGGucugcaaGGCGgcGCGGGCGu -3' miRNA: 3'- -GUCGUGC-GCG-UCC-------UCGCuuUGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 49599 | 0.69 | 0.524874 |
Target: 5'- uCAGUGC-CGCGuGGAGUuccGGAugGAGCGg -3' miRNA: 3'- -GUCGUGcGCGU-CCUCG---CUUugCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 212 | 0.69 | 0.524874 |
Target: 5'- gCAGCGCGCGCAcGAGCaugccguACG-GCGu -3' miRNA: 3'- -GUCGUGCGCGUcCUCGcuu----UGCuCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 5277 | 0.68 | 0.535332 |
Target: 5'- gCAGCACGgGCAGG-GCGGucGACuGGUu -3' miRNA: 3'- -GUCGUGCgCGUCCuCGCU--UUGcUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 12819 | 0.68 | 0.535332 |
Target: 5'- cCGGCGCGUGaagaAGGAGCGcgGCcucGCGg -3' miRNA: 3'- -GUCGUGCGCg---UCCUCGCuuUGcu-CGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 27996 | 0.68 | 0.535332 |
Target: 5'- -cGCAgGUGCAGGAcgagaacgacgGCGAGccgaucuacGCGGGCGc -3' miRNA: 3'- guCGUgCGCGUCCU-----------CGCUU---------UGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 63053 | 0.68 | 0.535332 |
Target: 5'- cCAGCAUGCGCcGGcacgucaucgcgGGCGAGuauGCG-GCGg -3' miRNA: 3'- -GUCGUGCGCGuCC------------UCGCUU---UGCuCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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