miRNA display CGI


Results 61 - 80 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 212 0.69 0.524874
Target:  5'- gCAGCGCGCGCAcGAGCaugccguACG-GCGu -3'
miRNA:   3'- -GUCGUGCGCGUcCUCGcuu----UGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 49599 0.69 0.524874
Target:  5'- uCAGUGC-CGCGuGGAGUuccGGAugGAGCGg -3'
miRNA:   3'- -GUCGUGcGCGU-CCUCG---CUUugCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 45325 0.69 0.523832
Target:  5'- aCGGCGCGaUGCaAGGucugcaaGGCGgcGCGGGCGu -3'
miRNA:   3'- -GUCGUGC-GCG-UCC-------UCGCuuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 3826 0.69 0.514494
Target:  5'- -uGCAUGCGCgccugaucgAGcGGGCGAAucugcuucGCGAGCGc -3'
miRNA:   3'- guCGUGCGCG---------UC-CUCGCUU--------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 13392 0.69 0.504198
Target:  5'- gGGCGCGCGCAuccacGAGCuccgcgaGAGCGGGCa -3'
miRNA:   3'- gUCGUGCGCGUc----CUCGc------UUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 50127 0.69 0.504198
Target:  5'- gAGCGCuCGCugaccGAGUGGAGCGAGCc -3'
miRNA:   3'- gUCGUGcGCGuc---CUCGCUUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 11951 0.69 0.493993
Target:  5'- -cGCACGCGCuGGGGauCGAcGGCGAuGCGu -3'
miRNA:   3'- guCGUGCGCGuCCUC--GCU-UUGCU-CGC- -5'
24100 5' -56.5 NC_005262.1 + 45083 0.69 0.493993
Target:  5'- -cGCGCGCGCAGGAcacguugaccGCGcucaacucGGCGGGUGc -3'
miRNA:   3'- guCGUGCGCGUCCU----------CGCu-------UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 38968 0.69 0.483883
Target:  5'- uCGGCACgGCGCcGGccGCGAucGCGAGCu -3'
miRNA:   3'- -GUCGUG-CGCGuCCu-CGCUu-UGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 12194 0.69 0.483883
Target:  5'- gAGCAaauCGCGCAGauGGCGA-ACGAGCu -3'
miRNA:   3'- gUCGU---GCGCGUCc-UCGCUuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 7268 0.69 0.473874
Target:  5'- aCGGCACaccaGCAGGGGUGucgccgauuCGAGCGg -3'
miRNA:   3'- -GUCGUGcg--CGUCCUCGCuuu------GCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 10559 0.7 0.467918
Target:  5'- cCGGcCGCGCGCAgccgcagcguaccgcGGAgcagcGCGgcGCGAGCGg -3'
miRNA:   3'- -GUC-GUGCGCGU---------------CCU-----CGCuuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 61965 0.7 0.463969
Target:  5'- -cGCAUGCGCAGccuGCG--GCGAGCa -3'
miRNA:   3'- guCGUGCGCGUCcu-CGCuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 51426 0.7 0.463969
Target:  5'- gCGGCGCGCGCGaGGGCGAuaccgucacGACGuccGCa -3'
miRNA:   3'- -GUCGUGCGCGUcCUCGCU---------UUGCu--CGc -5'
24100 5' -56.5 NC_005262.1 + 25377 0.7 0.463969
Target:  5'- gCGGCAucauCGCGCAGGAucGgGAGACGgccgaGGCGc -3'
miRNA:   3'- -GUCGU----GCGCGUCCU--CgCUUUGC-----UCGC- -5'
24100 5' -56.5 NC_005262.1 + 12488 0.7 0.454174
Target:  5'- gCGGCAUaCGCAGuGAGCGAAACc-GCGc -3'
miRNA:   3'- -GUCGUGcGCGUC-CUCGCUUUGcuCGC- -5'
24100 5' -56.5 NC_005262.1 + 21245 0.7 0.454174
Target:  5'- aCGGCACGa--AGGcGGCGAucCGAGCGg -3'
miRNA:   3'- -GUCGUGCgcgUCC-UCGCUuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 23338 0.7 0.452228
Target:  5'- gAGCACGCGCucgaccacggccGGcGUGAAGCGcGCGg -3'
miRNA:   3'- gUCGUGCGCGu-----------CCuCGCUUUGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 17341 0.7 0.43208
Target:  5'- cCGGCGCggcauucggguccgGCGCGGGcGGCGcgGCGGGCc -3'
miRNA:   3'- -GUCGUG--------------CGCGUCC-UCGCuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 63793 0.7 0.425482
Target:  5'- -cGCcCGCGCAGGAGgGGAAC-AGUa -3'
miRNA:   3'- guCGuGCGCGUCCUCgCUUUGcUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.