miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 22494 0.76 0.184112
Target:  5'- aAGCugGCGCGcGAGCGGAucGCGaAGCGg -3'
miRNA:   3'- gUCGugCGCGUcCUCGCUU--UGC-UCGC- -5'
24100 5' -56.5 NC_005262.1 + 23338 0.7 0.452228
Target:  5'- gAGCACGCGCucgaccacggccGGcGUGAAGCGcGCGg -3'
miRNA:   3'- gUCGUGCGCGu-----------CCuCGCUUUGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 24770 0.75 0.210048
Target:  5'- uCAGCAC-CGCGGcGAGCcGGGCGAGCa -3'
miRNA:   3'- -GUCGUGcGCGUC-CUCGcUUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 25377 0.7 0.463969
Target:  5'- gCGGCAucauCGCGCAGGAucGgGAGACGgccgaGGCGc -3'
miRNA:   3'- -GUCGU----GCGCGUCCU--CgCUUUGC-----UCGC- -5'
24100 5' -56.5 NC_005262.1 + 26050 0.68 0.57782
Target:  5'- gCGGCGCGCaaGCAGGGGCGcauCaAGCc -3'
miRNA:   3'- -GUCGUGCG--CGUCCUCGCuuuGcUCGc -5'
24100 5' -56.5 NC_005262.1 + 26179 0.68 0.556459
Target:  5'- uGGCGCGCGauccgauucaAGGAagGCuGggGCGAGCc -3'
miRNA:   3'- gUCGUGCGCg---------UCCU--CG-CuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 27996 0.68 0.535332
Target:  5'- -cGCAgGUGCAGGAcgagaacgacgGCGAGccgaucuacGCGGGCGc -3'
miRNA:   3'- guCGUgCGCGUCCU-----------CGCUU---------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 28402 0.67 0.599355
Target:  5'- gAGCguGCGCGCGGuauuGAGCGccGCGuGCGc -3'
miRNA:   3'- gUCG--UGCGCGUC----CUCGCuuUGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 28414 0.66 0.66432
Target:  5'- gCGGCACGUGCucGAGguCGAAuCGGGCc -3'
miRNA:   3'- -GUCGUGCGCGucCUC--GCUUuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 28992 0.66 0.702927
Target:  5'- gCAGCACgGCGagaAGGAGCucagccucauCGAGCa -3'
miRNA:   3'- -GUCGUG-CGCg--UCCUCGcuuu------GCUCGc -5'
24100 5' -56.5 NC_005262.1 + 29455 0.68 0.57782
Target:  5'- gCGGCAgagGCGCAGGucGcCGAGGCGAagGCGa -3'
miRNA:   3'- -GUCGUg--CGCGUCCu-C-GCUUUGCU--CGC- -5'
24100 5' -56.5 NC_005262.1 + 29524 0.72 0.354556
Target:  5'- aCAGCGCGCgGUAGcAGauguaGAGACGAGCa -3'
miRNA:   3'- -GUCGUGCG-CGUCcUCg----CUUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 34105 0.72 0.362953
Target:  5'- gGGCGguUGCGCAGGAuucGCGGGuUGGGCGg -3'
miRNA:   3'- gUCGU--GCGCGUCCU---CGCUUuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 34502 0.71 0.371487
Target:  5'- gCGGCGCGCGacuucuGCGAGACGAcGCGg -3'
miRNA:   3'- -GUCGUGCGCguccu-CGCUUUGCU-CGC- -5'
24100 5' -56.5 NC_005262.1 + 35237 0.66 0.66324
Target:  5'- -cGCGCGCGCGGcGgaagccccagauaGGCGuGAACGGGUa -3'
miRNA:   3'- guCGUGCGCGUC-C-------------UCGC-UUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 35341 0.68 0.556459
Target:  5'- -uGCAUGCGCAucaucGGCGAcacGGCGAGCa -3'
miRNA:   3'- guCGUGCGCGUcc---UCGCU---UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 36120 0.66 0.685846
Target:  5'- -cGCuGCGCGauacGGCGAGGCGAGCa -3'
miRNA:   3'- guCG-UGCGCguccUCGCUUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 36276 0.66 0.66432
Target:  5'- uCGGUGCGCGCGGGcaCGAGcUGGGUGc -3'
miRNA:   3'- -GUCGUGCGCGUCCucGCUUuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 36472 0.67 0.599355
Target:  5'- gGGCGCGCGCgAGGcuGGCGGAcaucGCGAa-- -3'
miRNA:   3'- gUCGUGCGCG-UCC--UCGCUU----UGCUcgc -5'
24100 5' -56.5 NC_005262.1 + 36751 0.73 0.314653
Target:  5'- gUAGCGCGUG-AGGucgauGGCGggGCGGGCu -3'
miRNA:   3'- -GUCGUGCGCgUCC-----UCGCuuUGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.