miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 52545 0.67 0.631837
Target:  5'- -cGCugGCGCAGGcGaugGAAACGAuCGa -3'
miRNA:   3'- guCGugCGCGUCCuCg--CUUUGCUcGC- -5'
24100 5' -56.5 NC_005262.1 + 52242 0.66 0.703989
Target:  5'- gCAGCGCGCGUgaugcacuucagccGGcGAGCGGc-CGAGUc -3'
miRNA:   3'- -GUCGUGCGCG--------------UC-CUCGCUuuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 52188 0.72 0.345479
Target:  5'- gGGCaugaccaGCGUGCAGGAGuCGAagcgccugcacGACGAGCu -3'
miRNA:   3'- gUCG-------UGCGCGUCCUC-GCU-----------UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 52041 0.66 0.707172
Target:  5'- gGGC-CGCGCcaguuguucgAGGAagaucGCGAAGcCGAGCa -3'
miRNA:   3'- gUCGuGCGCG----------UCCU-----CGCUUU-GCUCGc -5'
24100 5' -56.5 NC_005262.1 + 51566 0.66 0.707172
Target:  5'- uGGuCGCGCGC-GGAGCu---UGAGCGc -3'
miRNA:   3'- gUC-GUGCGCGuCCUCGcuuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 51426 0.7 0.463969
Target:  5'- gCGGCGCGCGCGaGGGCGAuaccgucacGACGuccGCa -3'
miRNA:   3'- -GUCGUGCGCGUcCUCGCU---------UUGCu--CGc -5'
24100 5' -56.5 NC_005262.1 + 51169 0.71 0.371487
Target:  5'- gAGCGCGCaGCAGGcAGCc-GACGAcGCGg -3'
miRNA:   3'- gUCGUGCG-CGUCC-UCGcuUUGCU-CGC- -5'
24100 5' -56.5 NC_005262.1 + 50447 0.66 0.685846
Target:  5'- uGGCGCaGCGCuucgagAGGGGUGAu-CGGGCc -3'
miRNA:   3'- gUCGUG-CGCG------UCCUCGCUuuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 50328 0.74 0.260671
Target:  5'- gCAGCGCccgccGCGCAGGA-CGAAgcgcccgcgacgaccGCGAGCGg -3'
miRNA:   3'- -GUCGUG-----CGCGUCCUcGCUU---------------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 50127 0.69 0.504198
Target:  5'- gAGCGCuCGCugaccGAGUGGAGCGAGCc -3'
miRNA:   3'- gUCGUGcGCGuc---CUCGCUUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 49599 0.69 0.524874
Target:  5'- uCAGUGC-CGCGuGGAGUuccGGAugGAGCGg -3'
miRNA:   3'- -GUCGUGcGCGU-CCUCG---CUUugCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 49548 0.67 0.620997
Target:  5'- gAGCGCGCuccaGCAGGucGCGcaGAACGAGg- -3'
miRNA:   3'- gUCGUGCG----CGUCCu-CGC--UUUGCUCgc -5'
24100 5' -56.5 NC_005262.1 + 49311 0.66 0.696539
Target:  5'- cCAGCAguucaagGCGCAGG-GCauGAccGACGAGCa -3'
miRNA:   3'- -GUCGUg------CGCGUCCuCG--CU--UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 49239 0.68 0.544807
Target:  5'- gCAGUccGCGCGCgAGGuccGCGAccagaucAACGAGCu -3'
miRNA:   3'- -GUCG--UGCGCG-UCCu--CGCU-------UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 48780 0.72 0.330196
Target:  5'- uGGCA-GCGCAGGAcgugcGCGAGcucACGAGCc -3'
miRNA:   3'- gUCGUgCGCGUCCU-----CGCUU---UGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 48453 0.67 0.642677
Target:  5'- -cGCGCGCGUAugccgcgcGGAucGCGAGccgcgugggcACGGGCGg -3'
miRNA:   3'- guCGUGCGCGU--------CCU--CGCUU----------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 47260 0.74 0.264644
Target:  5'- cCAGCAgGCGCAGGAcaagGCGAaaacgGACGccgcGGCGa -3'
miRNA:   3'- -GUCGUgCGCGUCCU----CGCU-----UUGC----UCGC- -5'
24100 5' -56.5 NC_005262.1 + 46804 0.68 0.556459
Target:  5'- gAGCGCGCGCucGGccGGCGGcAGCaGGGCa -3'
miRNA:   3'- gUCGUGCGCGu-CC--UCGCU-UUG-CUCGc -5'
24100 5' -56.5 NC_005262.1 + 45650 0.67 0.631837
Target:  5'- gGGCACGCGCucccGGu-UGAGGCGcAGCGc -3'
miRNA:   3'- gUCGUGCGCGu---CCucGCUUUGC-UCGC- -5'
24100 5' -56.5 NC_005262.1 + 45325 0.69 0.523832
Target:  5'- aCGGCGCGaUGCaAGGucugcaaGGCGgcGCGGGCGu -3'
miRNA:   3'- -GUCGUGC-GCG-UCC-------UCGCuuUGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.