Results 61 - 80 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24100 | 5' | -56.5 | NC_005262.1 | + | 35341 | 0.68 | 0.556459 |
Target: 5'- -uGCAUGCGCAucaucGGCGAcacGGCGAGCa -3' miRNA: 3'- guCGUGCGCGUcc---UCGCU---UUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 35237 | 0.66 | 0.66324 |
Target: 5'- -cGCGCGCGCGGcGgaagccccagauaGGCGuGAACGGGUa -3' miRNA: 3'- guCGUGCGCGUC-C-------------UCGC-UUUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 34502 | 0.71 | 0.371487 |
Target: 5'- gCGGCGCGCGacuucuGCGAGACGAcGCGg -3' miRNA: 3'- -GUCGUGCGCguccu-CGCUUUGCU-CGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 34105 | 0.72 | 0.362953 |
Target: 5'- gGGCGguUGCGCAGGAuucGCGGGuUGGGCGg -3' miRNA: 3'- gUCGU--GCGCGUCCU---CGCUUuGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 29524 | 0.72 | 0.354556 |
Target: 5'- aCAGCGCGCgGUAGcAGauguaGAGACGAGCa -3' miRNA: 3'- -GUCGUGCG-CGUCcUCg----CUUUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 29455 | 0.68 | 0.57782 |
Target: 5'- gCGGCAgagGCGCAGGucGcCGAGGCGAagGCGa -3' miRNA: 3'- -GUCGUg--CGCGUCCu-C-GCUUUGCU--CGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 28992 | 0.66 | 0.702927 |
Target: 5'- gCAGCACgGCGagaAGGAGCucagccucauCGAGCa -3' miRNA: 3'- -GUCGUG-CGCg--UCCUCGcuuu------GCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 28414 | 0.66 | 0.66432 |
Target: 5'- gCGGCACGUGCucGAGguCGAAuCGGGCc -3' miRNA: 3'- -GUCGUGCGCGucCUC--GCUUuGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 28402 | 0.67 | 0.599355 |
Target: 5'- gAGCguGCGCGCGGuauuGAGCGccGCGuGCGc -3' miRNA: 3'- gUCG--UGCGCGUC----CUCGCuuUGCuCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 27996 | 0.68 | 0.535332 |
Target: 5'- -cGCAgGUGCAGGAcgagaacgacgGCGAGccgaucuacGCGGGCGc -3' miRNA: 3'- guCGUgCGCGUCCU-----------CGCUU---------UGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 26179 | 0.68 | 0.556459 |
Target: 5'- uGGCGCGCGauccgauucaAGGAagGCuGggGCGAGCc -3' miRNA: 3'- gUCGUGCGCg---------UCCU--CG-CuuUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 26050 | 0.68 | 0.57782 |
Target: 5'- gCGGCGCGCaaGCAGGGGCGcauCaAGCc -3' miRNA: 3'- -GUCGUGCG--CGUCCUCGCuuuGcUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 25377 | 0.7 | 0.463969 |
Target: 5'- gCGGCAucauCGCGCAGGAucGgGAGACGgccgaGGCGc -3' miRNA: 3'- -GUCGU----GCGCGUCCU--CgCUUUGC-----UCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 24770 | 0.75 | 0.210048 |
Target: 5'- uCAGCAC-CGCGGcGAGCcGGGCGAGCa -3' miRNA: 3'- -GUCGUGcGCGUC-CUCGcUUUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 23338 | 0.7 | 0.452228 |
Target: 5'- gAGCACGCGCucgaccacggccGGcGUGAAGCGcGCGg -3' miRNA: 3'- gUCGUGCGCGu-----------CCuCGCUUUGCuCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 22494 | 0.76 | 0.184112 |
Target: 5'- aAGCugGCGCGcGAGCGGAucGCGaAGCGg -3' miRNA: 3'- gUCGugCGCGUcCUCGCUU--UGC-UCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 21332 | 0.66 | 0.675103 |
Target: 5'- -cGCACGUcCAGGAgGCGAu-CGAGgCGg -3' miRNA: 3'- guCGUGCGcGUCCU-CGCUuuGCUC-GC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 21245 | 0.7 | 0.454174 |
Target: 5'- aCGGCACGa--AGGcGGCGAucCGAGCGg -3' miRNA: 3'- -GUCGUGCgcgUCC-UCGCUuuGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 21005 | 0.66 | 0.685846 |
Target: 5'- gGGCgACGCGCcGGAGaCGAuguaGGGCu -3' miRNA: 3'- gUCG-UGCGCGuCCUC-GCUuug-CUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 20873 | 0.72 | 0.345479 |
Target: 5'- -cGCGCGCGCcGGAcgacgacGCGAcGACGAGCc -3' miRNA: 3'- guCGUGCGCGuCCU-------CGCU-UUGCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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