Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24100 | 5' | -56.5 | NC_005262.1 | + | 24770 | 0.75 | 0.210048 |
Target: 5'- uCAGCAC-CGCGGcGAGCcGGGCGAGCa -3' miRNA: 3'- -GUCGUGcGCGUC-CUCGcUUUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 22494 | 0.76 | 0.184112 |
Target: 5'- aAGCugGCGCGcGAGCGGAucGCGaAGCGg -3' miRNA: 3'- gUCGugCGCGUcCUCGCUU--UGC-UCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 44778 | 0.77 | 0.16544 |
Target: 5'- cCAGCGCGCgGCAGGccgAGCucGACGAGCu -3' miRNA: 3'- -GUCGUGCG-CGUCC---UCGcuUUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 59058 | 0.79 | 0.12532 |
Target: 5'- aAGCAgGUGCAGGAGCGcaucaagaagcuGACGGGCGu -3' miRNA: 3'- gUCGUgCGCGUCCUCGCu-----------UUGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 41161 | 0.8 | 0.103791 |
Target: 5'- gCAGCGCGCGCAGGAgggcaccgccGCGAucGCGuGCGc -3' miRNA: 3'- -GUCGUGCGCGUCCU----------CGCUu-UGCuCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 48780 | 0.72 | 0.330196 |
Target: 5'- uGGCA-GCGCAGGAcgugcGCGAGcucACGAGCc -3' miRNA: 3'- gUCGUgCGCGUCCU-----CGCUU---UGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 8051 | 0.72 | 0.330196 |
Target: 5'- gCAGCGCGCGUucugGGuGAGCGugGgGAGCa -3' miRNA: 3'- -GUCGUGCGCG----UC-CUCGCuuUgCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 10559 | 0.7 | 0.467918 |
Target: 5'- cCGGcCGCGCGCAgccgcagcguaccgcGGAgcagcGCGgcGCGAGCGg -3' miRNA: 3'- -GUC-GUGCGCGU---------------CCU-----CGCuuUGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 51426 | 0.7 | 0.463969 |
Target: 5'- gCGGCGCGCGCGaGGGCGAuaccgucacGACGuccGCa -3' miRNA: 3'- -GUCGUGCGCGUcCUCGCU---------UUGCu--CGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 25377 | 0.7 | 0.463969 |
Target: 5'- gCGGCAucauCGCGCAGGAucGgGAGACGgccgaGGCGc -3' miRNA: 3'- -GUCGU----GCGCGUCCU--CgCUUUGC-----UCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 12488 | 0.7 | 0.454174 |
Target: 5'- gCGGCAUaCGCAGuGAGCGAAACc-GCGc -3' miRNA: 3'- -GUCGUGcGCGUC-CUCGCUUUGcuCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 21245 | 0.7 | 0.454174 |
Target: 5'- aCGGCACGa--AGGcGGCGAucCGAGCGg -3' miRNA: 3'- -GUCGUGCgcgUCC-UCGCUuuGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 23338 | 0.7 | 0.452228 |
Target: 5'- gAGCACGCGCucgaccacggccGGcGUGAAGCGcGCGg -3' miRNA: 3'- gUCGUGCGCGu-----------CCuCGCUUUGCuCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 61618 | 0.7 | 0.41616 |
Target: 5'- aAGCGCGCGCgccugaAGGAGCucGA-GGGCGa -3' miRNA: 3'- gUCGUGCGCG------UCCUCGcuUUgCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 43782 | 0.71 | 0.406964 |
Target: 5'- gAGCGCGUagugcagcagauGCAGGAGCuuu-CGGGCGa -3' miRNA: 3'- gUCGUGCG------------CGUCCUCGcuuuGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 51169 | 0.71 | 0.371487 |
Target: 5'- gAGCGCGCaGCAGGcAGCc-GACGAcGCGg -3' miRNA: 3'- gUCGUGCG-CGUCC-UCGcuUUGCU-CGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 34502 | 0.71 | 0.371487 |
Target: 5'- gCGGCGCGCGacuucuGCGAGACGAcGCGg -3' miRNA: 3'- -GUCGUGCGCguccu-CGCUUUGCU-CGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 37888 | 0.72 | 0.362953 |
Target: 5'- aGGCACGgGCGGGAaguaugGUGgcGCGGGCu -3' miRNA: 3'- gUCGUGCgCGUCCU------CGCuuUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 10832 | 0.72 | 0.360419 |
Target: 5'- -cGCAUGCGCguccgccgcgcucaGGGGGCGgcAUGAGUGa -3' miRNA: 3'- guCGUGCGCG--------------UCCUCGCuuUGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 52188 | 0.72 | 0.345479 |
Target: 5'- gGGCaugaccaGCGUGCAGGAGuCGAagcgccugcacGACGAGCu -3' miRNA: 3'- gUCG-------UGCGCGUCCUC-GCU-----------UUGCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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