miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 10559 0.7 0.467918
Target:  5'- cCGGcCGCGCGCAgccgcagcguaccgcGGAgcagcGCGgcGCGAGCGg -3'
miRNA:   3'- -GUC-GUGCGCGU---------------CCU-----CGCuuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 51426 0.7 0.463969
Target:  5'- gCGGCGCGCGCGaGGGCGAuaccgucacGACGuccGCa -3'
miRNA:   3'- -GUCGUGCGCGUcCUCGCU---------UUGCu--CGc -5'
24100 5' -56.5 NC_005262.1 + 25377 0.7 0.463969
Target:  5'- gCGGCAucauCGCGCAGGAucGgGAGACGgccgaGGCGc -3'
miRNA:   3'- -GUCGU----GCGCGUCCU--CgCUUUGC-----UCGC- -5'
24100 5' -56.5 NC_005262.1 + 34502 0.71 0.371487
Target:  5'- gCGGCGCGCGacuucuGCGAGACGAcGCGg -3'
miRNA:   3'- -GUCGUGCGCguccu-CGCUUUGCU-CGC- -5'
24100 5' -56.5 NC_005262.1 + 51169 0.71 0.371487
Target:  5'- gAGCGCGCaGCAGGcAGCc-GACGAcGCGg -3'
miRNA:   3'- gUCGUGCG-CGUCC-UCGcuUUGCU-CGC- -5'
24100 5' -56.5 NC_005262.1 + 43782 0.71 0.406964
Target:  5'- gAGCGCGUagugcagcagauGCAGGAGCuuu-CGGGCGa -3'
miRNA:   3'- gUCGUGCG------------CGUCCUCGcuuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 61618 0.7 0.41616
Target:  5'- aAGCGCGCGCgccugaAGGAGCucGA-GGGCGa -3'
miRNA:   3'- gUCGUGCGCG------UCCUCGcuUUgCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 23338 0.7 0.452228
Target:  5'- gAGCACGCGCucgaccacggccGGcGUGAAGCGcGCGg -3'
miRNA:   3'- gUCGUGCGCGu-----------CCuCGCUUUGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 21245 0.7 0.454174
Target:  5'- aCGGCACGa--AGGcGGCGAucCGAGCGg -3'
miRNA:   3'- -GUCGUGCgcgUCC-UCGCUuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 12488 0.7 0.454174
Target:  5'- gCGGCAUaCGCAGuGAGCGAAACc-GCGc -3'
miRNA:   3'- -GUCGUGcGCGUC-CUCGCUUUGcuCGC- -5'
24100 5' -56.5 NC_005262.1 + 13796 0.66 0.653508
Target:  5'- gGGCGCcgGCGCGGcuucaucGGCgGGAGCGGGCGc -3'
miRNA:   3'- gUCGUG--CGCGUCc------UCG-CUUUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 35237 0.66 0.66324
Target:  5'- -cGCGCGCGCGGcGgaagccccagauaGGCGuGAACGGGUa -3'
miRNA:   3'- guCGUGCGCGUC-C-------------UCGC-UUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 4806 0.66 0.66432
Target:  5'- aAGCGCgacgGCGCGGGAggcGUGAGGCcgccGGCGg -3'
miRNA:   3'- gUCGUG----CGCGUCCU---CGCUUUGc---UCGC- -5'
24100 5' -56.5 NC_005262.1 + 36276 0.66 0.66432
Target:  5'- uCGGUGCGCGCGGGcaCGAGcUGGGUGc -3'
miRNA:   3'- -GUCGUGCGCGUCCucGCUUuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 13708 0.66 0.675103
Target:  5'- -cGCGCgGCGCGGGuuCGGucGGCGcAGCGg -3'
miRNA:   3'- guCGUG-CGCGUCCucGCU--UUGC-UCGC- -5'
24100 5' -56.5 NC_005262.1 + 50447 0.66 0.685846
Target:  5'- uGGCGCaGCGCuucgagAGGGGUGAu-CGGGCc -3'
miRNA:   3'- gUCGUG-CGCG------UCCUCGCUuuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 59055 0.66 0.685846
Target:  5'- uGGCGcCG-GCAGGAGCu---CGAGCa -3'
miRNA:   3'- gUCGU-GCgCGUCCUCGcuuuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 21005 0.66 0.685846
Target:  5'- gGGCgACGCGCcGGAGaCGAuguaGGGCu -3'
miRNA:   3'- gUCG-UGCGCGuCCUC-GCUuug-CUCGc -5'
24100 5' -56.5 NC_005262.1 + 52242 0.66 0.703989
Target:  5'- gCAGCGCGCGUgaugcacuucagccGGcGAGCGGc-CGAGUc -3'
miRNA:   3'- -GUCGUGCGCG--------------UC-CUCGCUuuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 6608 0.8 0.100934
Target:  5'- cCGGguCGaGCGGGAGCGAcACGAGCGg -3'
miRNA:   3'- -GUCguGCgCGUCCUCGCUuUGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.