miRNA display CGI


Results 81 - 100 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 49599 0.69 0.524874
Target:  5'- uCAGUGC-CGCGuGGAGUuccGGAugGAGCGg -3'
miRNA:   3'- -GUCGUGcGCGU-CCUCG---CUUugCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 3826 0.69 0.514494
Target:  5'- -uGCAUGCGCgccugaucgAGcGGGCGAAucugcuucGCGAGCGc -3'
miRNA:   3'- guCGUGCGCG---------UC-CUCGCUU--------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 38968 0.69 0.483883
Target:  5'- uCGGCACgGCGCcGGccGCGAucGCGAGCu -3'
miRNA:   3'- -GUCGUG-CGCGuCCu-CGCUu-UGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 61965 0.7 0.463969
Target:  5'- -cGCAUGCGCAGccuGCG--GCGAGCa -3'
miRNA:   3'- guCGUGCGCGUCcu-CGCuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 54126 0.67 0.610167
Target:  5'- aCGGUguuUGCGCAGGAGCG--GC-AGCGc -3'
miRNA:   3'- -GUCGu--GCGCGUCCUCGCuuUGcUCGC- -5'
24100 5' -56.5 NC_005262.1 + 40849 0.67 0.620997
Target:  5'- gCAGCAucacgccucccuCGCGCGGaGcauGGCGucGGCGAGCGc -3'
miRNA:   3'- -GUCGU------------GCGCGUC-C---UCGCu-UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 17245 0.67 0.631837
Target:  5'- -uGgGCGuCGCGGGAGCGGcGGCcGGCGc -3'
miRNA:   3'- guCgUGC-GCGUCCUCGCU-UUGcUCGC- -5'
24100 5' -56.5 NC_005262.1 + 52242 0.66 0.703989
Target:  5'- gCAGCGCGCGUgaugcacuucagccGGcGAGCGGc-CGAGUc -3'
miRNA:   3'- -GUCGUGCGCG--------------UC-CUCGCUuuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 21005 0.66 0.685846
Target:  5'- gGGCgACGCGCcGGAGaCGAuguaGGGCu -3'
miRNA:   3'- gUCG-UGCGCGuCCUC-GCUuug-CUCGc -5'
24100 5' -56.5 NC_005262.1 + 59055 0.66 0.685846
Target:  5'- uGGCGcCG-GCAGGAGCu---CGAGCa -3'
miRNA:   3'- gUCGU-GCgCGUCCUCGcuuuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 50447 0.66 0.685846
Target:  5'- uGGCGCaGCGCuucgagAGGGGUGAu-CGGGCc -3'
miRNA:   3'- gUCGUG-CGCG------UCCUCGCUuuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 13708 0.66 0.675103
Target:  5'- -cGCGCgGCGCGGGuuCGGucGGCGcAGCGg -3'
miRNA:   3'- guCGUG-CGCGUCCucGCU--UUGC-UCGC- -5'
24100 5' -56.5 NC_005262.1 + 36276 0.66 0.66432
Target:  5'- uCGGUGCGCGCGGGcaCGAGcUGGGUGc -3'
miRNA:   3'- -GUCGUGCGCGUCCucGCUUuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 4806 0.66 0.66432
Target:  5'- aAGCGCgacgGCGCGGGAggcGUGAGGCcgccGGCGg -3'
miRNA:   3'- gUCGUG----CGCGUCCU---CGCUUUGc---UCGC- -5'
24100 5' -56.5 NC_005262.1 + 35237 0.66 0.66324
Target:  5'- -cGCGCGCGCGGcGgaagccccagauaGGCGuGAACGGGUa -3'
miRNA:   3'- guCGUGCGCGUC-C-------------UCGC-UUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 13796 0.66 0.653508
Target:  5'- gGGCGCcgGCGCGGcuucaucGGCgGGAGCGGGCGc -3'
miRNA:   3'- gUCGUG--CGCGUCc------UCG-CUUUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 61790 0.67 0.642677
Target:  5'- gCAGCGCcgugGCGU-GGAGCau-GCGAGCa -3'
miRNA:   3'- -GUCGUG----CGCGuCCUCGcuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 45067 0.67 0.642677
Target:  5'- gAGC-CGCGCcgaagcugAGGAGCGccuuGACGccuGGCGg -3'
miRNA:   3'- gUCGuGCGCG--------UCCUCGCu---UUGC---UCGC- -5'
24100 5' -56.5 NC_005262.1 + 41546 0.67 0.642677
Target:  5'- aCGGCgugAUGCGCAGGccGGCcGGcgUGGGCGg -3'
miRNA:   3'- -GUCG---UGCGCGUCC--UCG-CUuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 45650 0.67 0.631837
Target:  5'- gGGCACGCGCucccGGu-UGAGGCGcAGCGc -3'
miRNA:   3'- gUCGUGCGCGu---CCucGCUUUGC-UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.