Results 101 - 116 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24100 | 5' | -56.5 | NC_005262.1 | + | 59055 | 0.66 | 0.685846 |
Target: 5'- uGGCGcCG-GCAGGAGCu---CGAGCa -3' miRNA: 3'- gUCGU-GCgCGUCCUCGcuuuGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 21005 | 0.66 | 0.685846 |
Target: 5'- gGGCgACGCGCcGGAGaCGAuguaGGGCu -3' miRNA: 3'- gUCG-UGCGCGuCCUC-GCUuug-CUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 52242 | 0.66 | 0.703989 |
Target: 5'- gCAGCGCGCGUgaugcacuucagccGGcGAGCGGc-CGAGUc -3' miRNA: 3'- -GUCGUGCGCG--------------UC-CUCGCUuuGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 61790 | 0.67 | 0.642677 |
Target: 5'- gCAGCGCcgugGCGU-GGAGCau-GCGAGCa -3' miRNA: 3'- -GUCGUG----CGCGuCCUCGcuuUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 45067 | 0.67 | 0.642677 |
Target: 5'- gAGC-CGCGCcgaagcugAGGAGCGccuuGACGccuGGCGg -3' miRNA: 3'- gUCGuGCGCG--------UCCUCGCu---UUGC---UCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 41546 | 0.67 | 0.642677 |
Target: 5'- aCGGCgugAUGCGCAGGccGGCcGGcgUGGGCGg -3' miRNA: 3'- -GUCG---UGCGCGUCC--UCG-CUuuGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 57476 | 0.67 | 0.58857 |
Target: 5'- gCGGCGgGCGCcgacgAGaGGCGGccGGCGAGCGc -3' miRNA: 3'- -GUCGUgCGCG-----UCcUCGCU--UUGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 57625 | 0.67 | 0.58857 |
Target: 5'- -cGCGagGCGCAGGAGCGcguGACGAu-- -3' miRNA: 3'- guCGUg-CGCGUCCUCGCu--UUGCUcgc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 8846 | 0.67 | 0.599355 |
Target: 5'- uGGUuuuCGCGCAGGu-UGAAGCGcAGCGa -3' miRNA: 3'- gUCGu--GCGCGUCCucGCUUUGC-UCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 15729 | 0.67 | 0.599355 |
Target: 5'- gCGGCucguCGCgGCAGGuGCGAccgacgcgcuuGCGGGCGc -3' miRNA: 3'- -GUCGu---GCG-CGUCCuCGCUu----------UGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 28402 | 0.67 | 0.599355 |
Target: 5'- gAGCguGCGCGCGGuauuGAGCGccGCGuGCGc -3' miRNA: 3'- gUCG--UGCGCGUC----CUCGCuuUGCuCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 54126 | 0.67 | 0.610167 |
Target: 5'- aCGGUguuUGCGCAGGAGCG--GC-AGCGc -3' miRNA: 3'- -GUCGu--GCGCGUCCUCGCuuUGcUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 40849 | 0.67 | 0.620997 |
Target: 5'- gCAGCAucacgccucccuCGCGCGGaGcauGGCGucGGCGAGCGc -3' miRNA: 3'- -GUCGU------------GCGCGUC-C---UCGCu-UUGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 17245 | 0.67 | 0.631837 |
Target: 5'- -uGgGCGuCGCGGGAGCGGcGGCcGGCGc -3' miRNA: 3'- guCgUGC-GCGUCCUCGCU-UUGcUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 45650 | 0.67 | 0.631837 |
Target: 5'- gGGCACGCGCucccGGu-UGAGGCGcAGCGc -3' miRNA: 3'- gUCGUGCGCGu---CCucGCUUUGC-UCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 52041 | 0.66 | 0.707172 |
Target: 5'- gGGC-CGCGCcaguuguucgAGGAagaucGCGAAGcCGAGCa -3' miRNA: 3'- gUCGuGCGCG----------UCCU-----CGCUUU-GCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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