miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 29455 0.68 0.57782
Target:  5'- gCGGCAgagGCGCAGGucGcCGAGGCGAagGCGa -3'
miRNA:   3'- -GUCGUg--CGCGUCCu-C-GCUUUGCU--CGC- -5'
24100 5' -56.5 NC_005262.1 + 26050 0.68 0.57782
Target:  5'- gCGGCGCGCaaGCAGGGGCGcauCaAGCc -3'
miRNA:   3'- -GUCGUGCG--CGUCCUCGCuuuGcUCGc -5'
24100 5' -56.5 NC_005262.1 + 7268 0.69 0.473874
Target:  5'- aCGGCACaccaGCAGGGGUGucgccgauuCGAGCGg -3'
miRNA:   3'- -GUCGUGcg--CGUCCUCGCuuu------GCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 61618 0.7 0.41616
Target:  5'- aAGCGCGCGCgccugaAGGAGCucGA-GGGCGa -3'
miRNA:   3'- gUCGUGCGCG------UCCUCGcuUUgCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 23338 0.7 0.452228
Target:  5'- gAGCACGCGCucgaccacggccGGcGUGAAGCGcGCGg -3'
miRNA:   3'- gUCGUGCGCGu-----------CCuCGCUUUGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 21245 0.7 0.454174
Target:  5'- aCGGCACGa--AGGcGGCGAucCGAGCGg -3'
miRNA:   3'- -GUCGUGCgcgUCC-UCGCUuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 12488 0.7 0.454174
Target:  5'- gCGGCAUaCGCAGuGAGCGAAACc-GCGc -3'
miRNA:   3'- -GUCGUGcGCGUC-CUCGCUUUGcuCGC- -5'
24100 5' -56.5 NC_005262.1 + 25377 0.7 0.463969
Target:  5'- gCGGCAucauCGCGCAGGAucGgGAGACGgccgaGGCGc -3'
miRNA:   3'- -GUCGU----GCGCGUCCU--CgCUUUGC-----UCGC- -5'
24100 5' -56.5 NC_005262.1 + 51426 0.7 0.463969
Target:  5'- gCGGCGCGCGCGaGGGCGAuaccgucacGACGuccGCa -3'
miRNA:   3'- -GUCGUGCGCGUcCUCGCU---------UUGCu--CGc -5'
24100 5' -56.5 NC_005262.1 + 42254 0.68 0.57782
Target:  5'- gAGCGcCGCGCucacuGCGGcGACGAGCGg -3'
miRNA:   3'- gUCGU-GCGCGuccu-CGCU-UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 18139 0.68 0.58104
Target:  5'- aAGCGCuGCGCcucaaccGGGAGCGcGugcccgccugaucgcGCGAGCGc -3'
miRNA:   3'- gUCGUG-CGCG-------UCCUCGCuU---------------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 48453 0.67 0.642677
Target:  5'- -cGCGCGCGUAugccgcgcGGAucGCGAGccgcgugggcACGGGCGg -3'
miRNA:   3'- guCGUGCGCGU--------CCU--CGCUU----------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 20596 0.67 0.642677
Target:  5'- gCGGCGCGcCGCAGG-GCuGuuGCGuAGCc -3'
miRNA:   3'- -GUCGUGC-GCGUCCuCG-CuuUGC-UCGc -5'
24100 5' -56.5 NC_005262.1 + 52545 0.67 0.631837
Target:  5'- -cGCugGCGCAGGcGaugGAAACGAuCGa -3'
miRNA:   3'- guCGugCGCGUCCuCg--CUUUGCUcGC- -5'
24100 5' -56.5 NC_005262.1 + 10978 0.67 0.631837
Target:  5'- uCGGCGCGC-CGGGAacgccggucGCGcucgcacggcuGACGAGCGa -3'
miRNA:   3'- -GUCGUGCGcGUCCU---------CGCu----------UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 49548 0.67 0.620997
Target:  5'- gAGCGCGCuccaGCAGGucGCGcaGAACGAGg- -3'
miRNA:   3'- gUCGUGCG----CGUCCu-CGC--UUUGCUCgc -5'
24100 5' -56.5 NC_005262.1 + 12655 0.67 0.599355
Target:  5'- aAGCGCGCGC-GGcGCGcgGCGAacccuGCGc -3'
miRNA:   3'- gUCGUGCGCGuCCuCGCuuUGCU-----CGC- -5'
24100 5' -56.5 NC_005262.1 + 36472 0.67 0.599355
Target:  5'- gGGCGCGCGCgAGGcuGGCGGAcaucGCGAa-- -3'
miRNA:   3'- gUCGUGCGCG-UCC--UCGCUU----UGCUcgc -5'
24100 5' -56.5 NC_005262.1 + 56945 0.67 0.58857
Target:  5'- -cGCACGCcgauccGCGcGGGCGAGuucGCGGGCGu -3'
miRNA:   3'- guCGUGCG------CGUcCUCGCUU---UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 8208 0.67 0.58857
Target:  5'- gCAGCGaugaucCGCGCGGGccaugagcugucGGCGAAGCucgaagccGAGCGc -3'
miRNA:   3'- -GUCGU------GCGCGUCC------------UCGCUUUG--------CUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.