Results 81 - 100 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24100 | 5' | -56.5 | NC_005262.1 | + | 29455 | 0.68 | 0.57782 |
Target: 5'- gCGGCAgagGCGCAGGucGcCGAGGCGAagGCGa -3' miRNA: 3'- -GUCGUg--CGCGUCCu-C-GCUUUGCU--CGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 42254 | 0.68 | 0.57782 |
Target: 5'- gAGCGcCGCGCucacuGCGGcGACGAGCGg -3' miRNA: 3'- gUCGU-GCGCGuccu-CGCU-UUGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 18139 | 0.68 | 0.58104 |
Target: 5'- aAGCGCuGCGCcucaaccGGGAGCGcGugcccgccugaucgcGCGAGCGc -3' miRNA: 3'- gUCGUG-CGCG-------UCCUCGCuU---------------UGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 8208 | 0.67 | 0.58857 |
Target: 5'- gCAGCGaugaucCGCGCGGGccaugagcugucGGCGAAGCucgaagccGAGCGc -3' miRNA: 3'- -GUCGU------GCGCGUCC------------UCGCUUUG--------CUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 56945 | 0.67 | 0.58857 |
Target: 5'- -cGCACGCcgauccGCGcGGGCGAGuucGCGGGCGu -3' miRNA: 3'- guCGUGCG------CGUcCUCGCUU---UGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 36472 | 0.67 | 0.599355 |
Target: 5'- gGGCGCGCGCgAGGcuGGCGGAcaucGCGAa-- -3' miRNA: 3'- gUCGUGCGCG-UCC--UCGCUU----UGCUcgc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 12655 | 0.67 | 0.599355 |
Target: 5'- aAGCGCGCGC-GGcGCGcgGCGAacccuGCGc -3' miRNA: 3'- gUCGUGCGCGuCCuCGCuuUGCU-----CGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 49548 | 0.67 | 0.620997 |
Target: 5'- gAGCGCGCuccaGCAGGucGCGcaGAACGAGg- -3' miRNA: 3'- gUCGUGCG----CGUCCu-CGC--UUUGCUCgc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 10978 | 0.67 | 0.631837 |
Target: 5'- uCGGCGCGC-CGGGAacgccggucGCGcucgcacggcuGACGAGCGa -3' miRNA: 3'- -GUCGUGCGcGUCCU---------CGCu----------UUGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 26050 | 0.68 | 0.57782 |
Target: 5'- gCGGCGCGCaaGCAGGGGCGcauCaAGCc -3' miRNA: 3'- -GUCGUGCG--CGUCCUCGCuuuGcUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 57271 | 0.68 | 0.574603 |
Target: 5'- cCAGCuCGCGCAGcucacggcccgcguGcAGCaGAACGAGCGc -3' miRNA: 3'- -GUCGuGCGCGUC--------------C-UCGcUUUGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 13392 | 0.69 | 0.504198 |
Target: 5'- gGGCGCGCGCAuccacGAGCuccgcgaGAGCGGGCa -3' miRNA: 3'- gUCGUGCGCGUc----CUCGc------UUUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 45325 | 0.69 | 0.523832 |
Target: 5'- aCGGCGCGaUGCaAGGucugcaaGGCGgcGCGGGCGu -3' miRNA: 3'- -GUCGUGC-GCG-UCC-------UCGCuuUGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 212 | 0.69 | 0.524874 |
Target: 5'- gCAGCGCGCGCAcGAGCaugccguACG-GCGu -3' miRNA: 3'- -GUCGUGCGCGUcCUCGcuu----UGCuCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 12819 | 0.68 | 0.535332 |
Target: 5'- cCGGCGCGUGaagaAGGAGCGcgGCcucGCGg -3' miRNA: 3'- -GUCGUGCGCg---UCCUCGCuuUGcu-CGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 27996 | 0.68 | 0.535332 |
Target: 5'- -cGCAgGUGCAGGAcgagaacgacgGCGAGccgaucuacGCGGGCGc -3' miRNA: 3'- guCGUgCGCGUCCU-----------CGCUU---------UGCUCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 63053 | 0.68 | 0.535332 |
Target: 5'- cCAGCAUGCGCcGGcacgucaucgcgGGCGAGuauGCG-GCGg -3' miRNA: 3'- -GUCGUGCGCGuCC------------UCGCUU---UGCuCGC- -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 49239 | 0.68 | 0.544807 |
Target: 5'- gCAGUccGCGCGCgAGGuccGCGAccagaucAACGAGCu -3' miRNA: 3'- -GUCG--UGCGCG-UCCu--CGCU-------UUGCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 59541 | 0.68 | 0.545863 |
Target: 5'- aAGCGCGCaauggGCcacgAGGAGCGcGAgGAGCa -3' miRNA: 3'- gUCGUGCG-----CG----UCCUCGCuUUgCUCGc -5' |
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24100 | 5' | -56.5 | NC_005262.1 | + | 26179 | 0.68 | 0.556459 |
Target: 5'- uGGCGCGCGauccgauucaAGGAagGCuGggGCGAGCc -3' miRNA: 3'- gUCGUGCGCg---------UCCU--CG-CuuUGCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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