miRNA display CGI


Results 101 - 116 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 19301 0.66 0.653508
Target:  5'- gCAGCcgACGUGCuc-GGCGAuGCGAGUGa -3'
miRNA:   3'- -GUCG--UGCGCGuccUCGCUuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 29455 0.68 0.57782
Target:  5'- gCGGCAgagGCGCAGGucGcCGAGGCGAagGCGa -3'
miRNA:   3'- -GUCGUg--CGCGUCCu-C-GCUUUGCU--CGC- -5'
24100 5' -56.5 NC_005262.1 + 57271 0.68 0.574603
Target:  5'- cCAGCuCGCGCAGcucacggcccgcguGcAGCaGAACGAGCGc -3'
miRNA:   3'- -GUCGuGCGCGUC--------------C-UCGcUUUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 11951 0.69 0.493993
Target:  5'- -cGCACGCGCuGGGGauCGAcGGCGAuGCGu -3'
miRNA:   3'- guCGUGCGCGuCCUC--GCU-UUGCU-CGC- -5'
24100 5' -56.5 NC_005262.1 + 45083 0.69 0.493993
Target:  5'- -cGCGCGCGCAGGAcacguugaccGCGcucaacucGGCGGGUGc -3'
miRNA:   3'- guCGUGCGCGUCCU----------CGCu-------UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 50127 0.69 0.504198
Target:  5'- gAGCGCuCGCugaccGAGUGGAGCGAGCc -3'
miRNA:   3'- gUCGUGcGCGuc---CUCGCUUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 13392 0.69 0.504198
Target:  5'- gGGCGCGCGCAuccacGAGCuccgcgaGAGCGGGCa -3'
miRNA:   3'- gUCGUGCGCGUc----CUCGc------UUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 45325 0.69 0.523832
Target:  5'- aCGGCGCGaUGCaAGGucugcaaGGCGgcGCGGGCGu -3'
miRNA:   3'- -GUCGUGC-GCG-UCC-------UCGCuuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 212 0.69 0.524874
Target:  5'- gCAGCGCGCGCAcGAGCaugccguACG-GCGu -3'
miRNA:   3'- -GUCGUGCGCGUcCUCGcuu----UGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 12819 0.68 0.535332
Target:  5'- cCGGCGCGUGaagaAGGAGCGcgGCcucGCGg -3'
miRNA:   3'- -GUCGUGCGCg---UCCUCGCuuUGcu-CGC- -5'
24100 5' -56.5 NC_005262.1 + 27996 0.68 0.535332
Target:  5'- -cGCAgGUGCAGGAcgagaacgacgGCGAGccgaucuacGCGGGCGc -3'
miRNA:   3'- guCGUgCGCGUCCU-----------CGCUU---------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 63053 0.68 0.535332
Target:  5'- cCAGCAUGCGCcGGcacgucaucgcgGGCGAGuauGCG-GCGg -3'
miRNA:   3'- -GUCGUGCGCGuCC------------UCGCUU---UGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 49239 0.68 0.544807
Target:  5'- gCAGUccGCGCGCgAGGuccGCGAccagaucAACGAGCu -3'
miRNA:   3'- -GUCG--UGCGCG-UCCu--CGCU-------UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 59541 0.68 0.545863
Target:  5'- aAGCGCGCaauggGCcacgAGGAGCGcGAgGAGCa -3'
miRNA:   3'- gUCGUGCG-----CG----UCCUCGCuUUgCUCGc -5'
24100 5' -56.5 NC_005262.1 + 26179 0.68 0.556459
Target:  5'- uGGCGCGCGauccgauucaAGGAagGCuGggGCGAGCc -3'
miRNA:   3'- gUCGUGCGCg---------UCCU--CG-CuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 56758 0.66 0.653508
Target:  5'- -cGCugGCGUcGG-GCGA--CGAGCGc -3'
miRNA:   3'- guCGugCGCGuCCuCGCUuuGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.